Package: MsBackendTimsTof 0.2.0

Johannes Rainer

MsBackendTimsTof: Mass spectrometry Data Backend for Bruker TimsTOF Files

Mass spectrometry (MS) data backend supporting import and export of (ion mobility) MS data from Bruker TimsTOF files. The backend uses the opentimsr package which relies on the proprietory vendor C++ library for raw data access. The backend thus supports import of MS data from the original raw data files.

Authors:Johannes Rainer [aut, cre], Andrea Vicini [aut], Steffen Neumann [ctb], Carolin Huber [ctb]

MsBackendTimsTof_0.2.0.tar.gz

MsBackendTimsTof_0.2.0.tgz(r-4.6-any)MsBackendTimsTof_0.2.0.tgz(r-4.5-any)
MsBackendTimsTof_0.2.0.tar.gz(r-4.7-any)MsBackendTimsTof_0.2.0.tar.gz(r-4.6-any)
MsBackendTimsTof_0.2.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MsBackendTimsTof/json (API)

# Install 'MsBackendTimsTof' in R:

install.packages('MsBackendTimsTof', repos = c('https://rformassspectrometry.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rformassspectrometry/msbackendtimstof/issues

On CRAN:

infrastructure massspectrometry metabolomics dataimport mass-spectrometry

3.85 score 7 stars 1 scripts 4 exports 24 dependencies

Last updated from:9ac576c649. Checks:2 NOTE, 2 OK, 2 ERROR, 3 FAIL. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	NOTE	257
source / vignettes	OK	251
linux-release-x86_64	NOTE	250
macos-release-arm64	ERROR	151
macos-oldrel-arm64	ERROR	150
windows-devel	FAIL	86
windows-release	FAIL	97
windows-oldrel	FAIL	84
wasm-release	OK	211

Exports:MsBackendTimsTof precScanNum spectraNames tic

Dependencies:BH BiocGenerics BiocParallel clue cluster codetools cpp11 data.table formatR fs futile.logger futile.options generics IRanges lambda.r MASS MetaboCoreUtils MsCoreUtils opentimsr ProtGenerics Rcpp S4Vectors snow Spectra

Description and usage of MsBackendTimsTof

Introduction | Installation | Accessing data from Bruker TimsTOF files | Session information

Rendered fromMsBackendTimsTof.Rmdusingknitr::rmarkdown

Last update: 2026-06-24
Started: 2022-03-29

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
TimsTOF data backend	$,MsBackendTimsTof-method $<-,MsBackendTimsTof-method backendInitialize,MsBackendTimsTof-method dataStorage,MsBackendTimsTof-method extractByIndex,MsBackendTimsTof,ANY-method intensity,MsBackendTimsTof-method length,MsBackendTimsTof-method MsBackendTimsTof MsBackendTimsTof-class msLevel,MsBackendTimsTof-method mz,MsBackendTimsTof-method peaksData,MsBackendTimsTof-method peaksVariables,MsBackendTimsTof-method precScanNum,MsBackendTimsTof-method rtime,MsBackendTimsTof-method selectSpectraVariables,MsBackendTimsTof-method show,MsBackendTimsTof-method spectraData,MsBackendTimsTof-method spectraNames,MsBackendTimsTof-method spectraVariables,MsBackendTimsTof-method tic,MsBackendTimsTof-method [,MsBackendTimsTof-method

Help page

Topics

TimsTOF data backend

$,MsBackendTimsTof-method $<-,MsBackendTimsTof-method backendInitialize,MsBackendTimsTof-method dataStorage,MsBackendTimsTof-method extractByIndex,MsBackendTimsTof,ANY-method intensity,MsBackendTimsTof-method length,MsBackendTimsTof-method MsBackendTimsTof MsBackendTimsTof-class msLevel,MsBackendTimsTof-method mz,MsBackendTimsTof-method peaksData,MsBackendTimsTof-method peaksVariables,MsBackendTimsTof-method precScanNum,MsBackendTimsTof-method rtime,MsBackendTimsTof-method selectSpectraVariables,MsBackendTimsTof-method show,MsBackendTimsTof-method spectraData,MsBackendTimsTof-method spectraNames,MsBackendTimsTof-method spectraVariables,MsBackendTimsTof-method tic,MsBackendTimsTof-method [,MsBackendTimsTof-method