Package: MsBackendTimsTof 0.98.3

Johannes Rainer

MsBackendTimsTof: Mass Spectrometry Data Backend for Bruker TimsTOF Files

Mass spectrometry (MS) data backend supporting import and export of (ion mobility) MS data from Bruker TimsTOF files. The backend uses the opentimsr package which relies on the proprietory vendor C++ library for raw data access. The backend thus supports import of MS data from the original raw data files without needing to convert them to an open format.

Authors:Johannes Rainer [aut, cre], Andrea Vicini [aut], Steffen Neumann [ctb], Carolin Huber [ctb], Roger Gine [ctb], Gabriele Tomè [aut]

MsBackendTimsTof_0.98.3.tar.gz
MsBackendTimsTof_0.98.3.tgz(r-4.6-any)MsBackendTimsTof_0.98.3.tgz(r-4.5-any)
MsBackendTimsTof_0.98.3.tar.gz(r-4.7-any)MsBackendTimsTof_0.98.3.tar.gz(r-4.6-any)
MsBackendTimsTof_0.98.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
MsBackendTimsTof/json (API)

# Install 'MsBackendTimsTof' in R:

install.packages('MsBackendTimsTof', repos = c('https://rformassspectrometry.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rformassspectrometry/msbackendtimstof/issues

On CRAN:

infrastructure massspectrometry metabolomics dataimport mass-spectrometry

4.32 score 7 stars 5 exports 46 dependencies

Last updated from:0260916bd0. Checks:2 NOTE, 2 OK, 2 ERROR, 3 FAIL. Indexed: yes.

Target	Result	Time
linux-devel	NOTE	229
source / vignettes	OK	275
linux-release	NOTE	263
macos-release	ERROR	212
macos-oldrel	ERROR	202
windows-devel	FAIL	105
windows-release	FAIL	74
windows-oldrel	FAIL	86
wasm-release	OK	168

Exports:MsBackendTimsTof precScanNum setup_converter_library spectraNames tic

Dependencies:BH BiocGenerics BiocParallel bit bit64 blob cachem cli clue cluster codetools cpp11 data.table DBI dplyr fastmap formatR fs futile.logger futile.options generics glue IRanges lambda.r lifecycle magrittr MASS memoise MetaboCoreUtils MsCoreUtils opentimsr pillar pkgconfig ProtGenerics R6 Rcpp rlang RSQLite S4Vectors snow Spectra tibble tidyselect utf8 vctrs withr

Description and usage of MsBackendTimsTof

Introduction | Installation | Accessing data from Bruker TimsTOF files | Session information

Rendered fromMsBackendTimsTof.Rmdusingknitr::rmarkdown

Last update: 2026-09-30
Started: 2022-03-29

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
TimsTOF MS data backend	$,MsBackendTimsTof-method $<-,MsBackendTimsTof-method backendInitialize,MsBackendTimsTof-method dataStorage,MsBackendTimsTof-method extractByIndex,MsBackendTimsTof,ANY-method intensity,MsBackendTimsTof-method length,MsBackendTimsTof-method MsBackendTimsTof MsBackendTimsTof-class mz,MsBackendTimsTof-method peaksData,MsBackendTimsTof-method peaksVariables,MsBackendTimsTof-method precScanNum,MsBackendTimsTof-method rtime,MsBackendTimsTof-method selectSpectraVariables,MsBackendTimsTof-method show,MsBackendTimsTof-method spectraData,MsBackendTimsTof-method spectraNames,MsBackendTimsTof-method tic,MsBackendTimsTof-method [,MsBackendTimsTof-method
Setup converter library for Bruker files	setup_converter_library

Help page

Topics

TimsTOF MS data backend

$,MsBackendTimsTof-method $<-,MsBackendTimsTof-method backendInitialize,MsBackendTimsTof-method dataStorage,MsBackendTimsTof-method extractByIndex,MsBackendTimsTof,ANY-method intensity,MsBackendTimsTof-method length,MsBackendTimsTof-method MsBackendTimsTof MsBackendTimsTof-class mz,MsBackendTimsTof-method peaksData,MsBackendTimsTof-method peaksVariables,MsBackendTimsTof-method precScanNum,MsBackendTimsTof-method rtime,MsBackendTimsTof-method selectSpectraVariables,MsBackendTimsTof-method show,MsBackendTimsTof-method spectraData,MsBackendTimsTof-method spectraNames,MsBackendTimsTof-method tic,MsBackendTimsTof-method [,MsBackendTimsTof-method

Setup converter library for Bruker files

setup_converter_library