Package: MsBackendTimsTof 0.1.5

Johannes Rainer

MsBackendTimsTof: Mass spectrometry Data Backend for Bruker TimsTOF Files

Mass spectrometry (MS) data backend supporting import and export of (ion mobility) MS data from Bruker TimsTOF files. The backend uses the opentimsr package which relies on the proprietory vendor C++ library for raw data access. The backend thus supports import of MS data from the original raw data files.

Authors:Johannes Rainer [aut, cre], Andrea Vicini [aut], Steffen Neumann [ctb], Carolin Huber [ctb]

MsBackendTimsTof_0.1.5.tar.gz
MsBackendTimsTof_0.1.5.zip(r-4.5)MsBackendTimsTof_0.1.5.zip(r-4.4)MsBackendTimsTof_0.1.5.zip(r-4.3)
MsBackendTimsTof_0.1.5.tgz(r-4.5-any)MsBackendTimsTof_0.1.5.tgz(r-4.4-any)MsBackendTimsTof_0.1.5.tgz(r-4.3-any)
MsBackendTimsTof_0.1.5.tar.gz(r-4.5-noble)MsBackendTimsTof_0.1.5.tar.gz(r-4.4-noble)
MsBackendTimsTof_0.1.5.tgz(r-4.4-emscripten)MsBackendTimsTof_0.1.5.tgz(r-4.3-emscripten)
MsBackendTimsTof.pdf |MsBackendTimsTof.html✨
MsBackendTimsTof/json (API)
NEWS

# Install 'MsBackendTimsTof' in R:
install.packages('MsBackendTimsTof', repos = c('https://rformassspectrometry.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rformassspectrometry/msbackendtimstof/issues

On CRAN:

Conda:

infrastructuremassspectrometrymetabolomicsdataimportmass-spectrometry

3.85 score 7 stars 4 exports 38 dependencies

Last updated 1 years agofrom:2e328e1044. Checks:1 OK, 7 ERROR. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKMar 03 2025
R-4.5-winERRORMar 03 2025
R-4.5-macERRORMar 03 2025
R-4.5-linuxERRORMar 03 2025
R-4.4-winERRORMar 03 2025
R-4.4-macERRORMar 03 2025
R-4.3-winERRORMar 03 2025
R-4.3-macERRORMar 03 2025

Exports:MsBackendTimsTofprecScanNumspectraNamestic

Dependencies:BHBiocGenericsBiocParallelbitbit64blobcachemcliclueclustercodetoolscpp11DBIfastmapformatRfsfutile.loggerfutile.optionsgenericsglueIRangeslambda.rlifecycleMASSmemoiseMetaboCoreUtilsMsCoreUtilsopentimsrpkgconfigplogrProtGenericsRcpprlangRSQLiteS4VectorssnowSpectravctrs

Description and usage of MsBackendTimsTof

Rendered fromMsBackendTimsTof.Rmdusingknitr::rmarkdownon Mar 03 2025.

Last update: 2023-04-11
Started: 2022-03-29

Readme and manuals

Help Manual

Help pageTopics
TimsTOF data backend$,MsBackendTimsTof-method $<-,MsBackendTimsTof-method backendInitialize,MsBackendTimsTof-method dataStorage,MsBackendTimsTof-method intensity,MsBackendTimsTof-method length,MsBackendTimsTof-method MsBackendTimsTof MsBackendTimsTof-class msLevel,MsBackendTimsTof-method mz,MsBackendTimsTof-method peaksData,MsBackendTimsTof-method peaksVariables,MsBackendTimsTof-method precScanNum,MsBackendTimsTof-method rtime,MsBackendTimsTof-method selectSpectraVariables,MsBackendTimsTof-method show,MsBackendTimsTof-method spectraData,MsBackendTimsTof-method spectraNames,MsBackendTimsTof-method spectraVariables,MsBackendTimsTof-method tic,MsBackendTimsTof-method [,MsBackendTimsTof-method