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  "Package": "MsBackendTimsTof",
  "Title": "Mass spectrometry Data Backend for Bruker TimsTOF Files",
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  "Description": "Mass spectrometry (MS) data backend supporting import and\nexport of (ion mobility) MS data from Bruker TimsTOF files. The\nbackend uses the opentimsr package which relies on the\nproprietory vendor C++ library for raw data access. The backend\nthus supports import of MS data from the original raw data\nfiles.",
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  "Repository": "https://rformassspectrometry.r-universe.dev",
  "Date/Publication": "2026-06-24 08:33:33 UTC",
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  "Author": "Johannes Rainer [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-6977-7147>),\nAndrea Vicini [aut] (ORCID: <https://orcid.org/0000-0001-9438-6909>),\nSteffen Neumann [ctb] (ORCID: <https://orcid.org/0000-0002-7899-7192>),\nCarolin Huber [ctb] (ORCID: <https://orcid.org/0000-0002-9355-8948>)",
  "Maintainer": "Johannes Rainer <Johannes.Rainer@eurac.edu>",
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