Package: MsBackendTimsTof
Title: Mass Spectrometry Data Backend for Bruker TimsTOF Files
Version: 0.98.3
Authors@R: 
    c(person(given = "Johannes", family = "Rainer",
             email = "Johannes.Rainer@eurac.edu",
             role = c("aut", "cre"),
             comment = c(ORCID = "0000-0002-6977-7147")),
      person(given = "Andrea", family = "Vicini",
             email = "andrea.vicini@eurac.edu",
             role = "aut",
             comment = c(ORCID = "0000-0001-9438-6909")),
      person(given = "Steffen", family = "Neumann",
             email = "sneumann@ipb-halle.de",
             role = "ctb",
             comment = c(ORCID = "0000-0002-7899-7192")),
      person(given = "Carolin", family = "Huber",
             email = "carolin-elisabeth.huber@ufz.de",
             role = c("ctb"),
             comment = c(ORCID = "0000-0002-9355-8948")),
      person(given = "Roger", family = "Gine",
             email = "alrgibe9@gmail.com",
             role = c("ctb"),
             comment = c(ORCID = "0000-0003-0288-9619")),
      person(given = "Gabriele", family = "Tomè",
             email = "gabriele.tome@eurac.edu",
             role = c("aut"),
             comment = c(ORCID = "0000-0002-3976-6068",
             fnd = "MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded by the Autonomous Province of Bolzano under the Joint Projects South Tyrol–Germany 2025 program."))
	     )
Description: Mass spectrometry (MS) data backend supporting import and
        export of (ion mobility) MS data from Bruker TimsTOF files. The
        backend uses the opentimsr package which relies on the
        proprietory vendor C++ library for raw data access. The backend
        thus supports import of MS data from the original raw data
        files without needing to convert them to an open format.
Depends: R (>= 4.1), Spectra (>= 1.5.17)
Imports: IRanges, BiocParallel, methods, opentimsr (>= 1.0.11),
        MsCoreUtils, S4Vectors, ProtGenerics, RSQLite, DBI, data.table,
        dplyr
Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19),
        rmarkdown, BiocFileCache
Remotes: michalsta/opentims/src/opentimsr
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
BugReports: https://github.com/RforMassSpectrometry/MsBackendTimsTof/issues
URL: https://github.com/RforMassSpectrometry/MsBackendTimsTof
biocViews: Infrastructure, MassSpectrometry, Metabolomics, DataImport
Roxygen: list(markdown=TRUE)
Config/roxygen2/version: 8.1.0
Repository: https://rformassspectrometry.r-universe.dev
Date/Publication: 2026-10-02 12:12:06 UTC
RemoteUrl: https://github.com/rformassspectrometry/MsBackendTimsTof
RemoteRef: HEAD
RemoteSha: 0260916bd0a470bac242e258aba5a66aebcb5898
NeedsCompilation: no
Packaged: 2026-10-02 13:02:22 UTC; root
Author: Johannes Rainer [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6977-7147>),
  Andrea Vicini [aut] (ORCID: <https://orcid.org/0000-0001-9438-6909>),
  Steffen Neumann [ctb] (ORCID: <https://orcid.org/0000-0002-7899-7192>),
  Carolin Huber [ctb] (ORCID: <https://orcid.org/0000-0002-9355-8948>),
  Roger Gine [ctb] (ORCID: <https://orcid.org/0000-0003-0288-9619>),
  Gabriele Tomè [aut] (ORCID: <https://orcid.org/0000-0002-3976-6068>,
    fnd: MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded
    by the Autonomous Province of Bolzano under the Joint Projects
    South Tyrol–Germany 2025 program.)
Maintainer: Johannes Rainer <Johannes.Rainer@eurac.edu>