Package: SpectraStash 0.97.4

Johannes Rainer

SpectraStash: Serialize and restore Spectra objects in interoperable file formats

The serialization mechanism of R allows to save and load R data objects in a binary format, that can however not be read by other programming languages or software. The SpectraStash package implements the serialization methods from the MsStash package for Spectra objects and its MsBackend classes. A variety of different file formats and types, including HDF5 and JSON-based formats defined by the Bioconductor *alabaster* package are supported. The file type can be defined and configured through a second argument `param` of the save/read methods.

Authors:Johannes Rainer [aut, cre], Philippine Louail [aut], Laurent Gatto [ctb], Gabriele Tomè [ctb]

SpectraStash_0.97.4.tar.gz
SpectraStash_0.97.4.zip(r-4.7)SpectraStash_0.97.4.zip(r-4.6)
SpectraStash_0.97.4.tgz(r-4.6-any)
SpectraStash_0.97.4.tar.gz(r-4.7-any)SpectraStash_0.97.4.tar.gz(r-4.6-any)
SpectraStash_0.97.4.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
SpectraStash/json (API)

# Install 'SpectraStash' in R:
install.packages('SpectraStash', repos = c('https://rformassspectrometry.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rformassspectrometry/spectrastash/issues

On CRAN:

Conda:

infrastructuremassspectrometrymetabolomicsdataimportproteomics

2.30 score 2 exports 38 dependencies

Last updated from:24a8d18cf3. Checks:7 OK, 2 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK223
source / vignettesOK202
linux-release-x86_64OK272
macos-release-arm64OK183
macos-oldrel-arm64FAIL103
windows-develOK442
windows-releaseOK387
windows-oldrelFAIL94
wasm-releaseOK146

Exports:saveMsObjectsaveObject

Dependencies:alabaster.basealabaster.schemasassortheadBHBiocGenericsbiocmakeBiocParallelclueclustercodetoolscpp11curldata.tabledir.expiryfilelockformatRfsfutile.loggerfutile.optionsgenericsIRangesjsonlitejsonvalidatelambda.rMASSMetaboCoreUtilsMsCoreUtilsMsStashProtGenericsR6Rcpprhdf5rhdf5filtersRhdf5libS4VectorssnowSpectraV8

Readme and manuals

Help Manual

Help pageTopics
Stash for 'MsBackendCached'MsBackendCachedStash readMsObject,MsBackendCached,AlabasterParam-method readMsObject,MsBackendCached,PlainTextParam-method saveMsObject,MsBackendCached,AlabasterParam-method saveMsObject,MsBackendCached,PlainTextParam-method saveObject,MsBackendCached-method
MsBackendHdf5Peaks StashMsBackendHdf5PeaksStash readMsObject,MsBackendHdf5Peaks,AlabasterParam-method readMsObject,MsBackendHdf5Peaks,PlainTextParam-method saveMsObject,MsBackendHdf5Peaks,AlabasterParam-method saveMsObject,MsBackendHdf5Peaks,PlainTextParam-method saveObject,MsBackendHdf5Peaks-method
MsBackendMzR StashMsBackendMzRStash readMsObject,MsBackendMzR,AlabasterParam-method readMsObject,MsBackendMzR,PlainTextParam-method saveMsObject,MsBackendMzR,AlabasterParam-method saveMsObject,MsBackendMzR,PlainTextParam-method saveObject,MsBackendMzR-method
Spectra StashreadMsObject,Spectra,AlabasterParam-method readMsObject,Spectra,PlainTextParam-method saveMsObject,Spectra,AlabasterParam-method saveMsObject,Spectra,PlainTextParam-method saveObject,Spectra-method SpectraStash