Package: RuSirius 1.0.2

Philippine Louail

RuSirius: R Implementation of the Sirius software

The RuSirius package allows the user to interact with the Sirius software from R. Sirius is a software for the analysis and annotation of mass spectrometry data. RuSirius makes use of the API present in RSirius. It is dependent on Sirius 6.4, please ensure you have the right version downloaded.

Authors:Philippine Louail [aut, cre], Adriano Rutz [ctb], Markus Fleischauer [ctb], Jonas Emmert [ctb]

RuSirius_1.0.2.tar.gz
RuSirius_1.0.2.zip(r-4.7)RuSirius_1.0.2.zip(r-4.6)RuSirius_1.0.2.zip(r-4.5)
RuSirius_1.0.2.tgz(r-4.6-any)RuSirius_1.0.2.tgz(r-4.5-any)
RuSirius_1.0.2.tar.gz(r-4.7-any)RuSirius_1.0.2.tar.gz(r-4.6-any)
RuSirius_1.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
RuSirius/json (API)

# Install 'RuSirius' in R:

install.packages('RuSirius', repos = c('https://rformassspectrometry.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rformassspectrometry/rusirius/issues

On CRAN:

massspectrometry metabolomics annotation software

5.18 score 2 stars 15 scripts 31 exports 130 dependencies

Last updated from:936cb875b3. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	442
source / vignettes	OK	356
linux-release-x86_64	OK	487
macos-release-arm64	OK	372
macos-oldrel-arm64	OK	321
windows-devel	OK	440
windows-release	OK	380
windows-oldrel	OK	394
wasm-release	OK	225

Exports:checkConnection closeGUI config createDb deleteFeatures deleteJob deNovoStructureParam featuresId featuresInfo formulaIdParam import infoDb jobInfo listDbs listOpenProjects logIn mapFeatures openGUI openProject predictParam projectInfo removeDb results run saveConfig show shutdown Sirius spectraMatchingParam structureDbSearchParam zodiacParam

Dependencies:abind AnnotationDbi AnnotationFilter AnnotationHub askpass base64enc BH Biobase BiocBaseUtils BiocFileCache BiocGenerics BiocManager BiocParallel BiocVersion Biostrings bit bit64 bitops blob bslib cachem ChemmineR cli clue cluster codetools CompoundDb cpp11 crayon crosstalk curl data.table DBI dbplyr DelayedArray digest dplyr DT evaluate farver fastmap filelock fontawesome formatR fs futile.logger futile.options generics GenomicRanges ggplot2 glue gridExtra gtable highr htmltools htmlwidgets httr httr2 igraph IRanges isoband jquerylib jsonlite KEGGREST knitr labeling lambda.r later lattice lazyeval lifecycle magrittr MASS Matrix MatrixGenerics matrixStats memoise MetaboAnnotation MetaboCoreUtils mime MsCoreUtils MultiAssayExperiment openssl otel pillar pkgconfig plotly plyr png promises ProtGenerics purrr QFeatures R6 rappdirs RColorBrewer Rcpp RCurl reshape2 rjson rlang rmarkdown RSirius RSQLite rsvg S4Arrays S4Vectors S7 sass scales Seqinfo snow SparseArray Spectra stringi stringr SummarizedExperiment sys tibble tidyr tidyselect tinytex utf8 vctrs viridisLite withr xfun xml2 XVector yaml

Getting Started with RuSirius

Rendered fromGettingStarted.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2026-03-23
Started: 2026-02-11

Importing Spectra into Sirius

Rendered fromImportSpectra.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2026-03-23
Started: 2025-02-24

Predict formula and structure of chromatographic peaks from an XcmsExperiment object Sirius through the RuSirius package.

Rendered fromChromatographic_peak_annotation_public_dataset.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2026-03-23
Started: 2025-01-20

Retrieving Results from Sirius

Rendered fromRetrievingResults.Rmdusingknitr::rmarkdownon Jun 03 2026.

Last update: 2026-03-23
Started: 2026-02-18

Using Custom Databases in Sirius

Rendered fromCustomDatabases.Rmdusingknitr::rmarkdownon Jun 03 2026.