Package: RuSirius
Title: R Implementation of the Sirius software
Version: 1.0.4
Description: The RuSirius package allows the user to interact with the
        Sirius software from R. Sirius is a software for the analysis
        and annotation of mass spectrometry data. RuSirius makes use of
        the API present in RSirius. It is dependent on Sirius 6.4,
        please ensure you have the right version downloaded.
Authors@R: c(person(given = "Philippine", family = "Louail",
		    comment = c(ORCID = "0009-0007-5429-6846"),
		    email = "philippine.louail@eurac.edu",
		    role = c("aut", "cre")),
		   person(given = "Adriano", family = "Rutz", email = "adafede@gmail.com", role = c("ctb"), comment = c(ORCID = "0000-0003-0443-9902")),
		   person(given = "Markus", family = "Fleischauer", role = c("ctb")),
	       person(given = "Jonas", family = "Emmert", role = c("ctb")))
Depends: ProtGenerics (>= 1.35.4), R (>= 4.4.0), RSirius, Spectra (>=
        1.17.3)
Imports: jsonlite, methods, MetaboAnnotation, dplyr
Suggests: testthat, knitr (>= 1.1.0), rmarkdown, BiocStyle, xcms (>=
        4.5.2), MsExperiment, MsDataHub
License: Apache License 2.0
Encoding: UTF-8
biocViews: MassSpectrometry, Metabolomics, Annotation, Software
Roxygen: list(markdown=TRUE)
BugReports: https://github.com/RforMassSpectrometry/RuSirius/issues
URL: https://github.com/RforMassSpectrometry/RuSirius
Remotes: sirius-ms/sirius-client-openAPI/client-api_r/generated@6470a73
VignetteBuilder: knitr
Collate: 'Sirius.R' 'Utils.R' 'helpers.R' 'import.R' 'results.R'
        'run-param.R' 'run.R' 'siriusDbs.R'
Config/roxygen2/version: 8.0.0
Repository: https://rformassspectrometry.r-universe.dev
Date/Publication: 2026-07-08 14:44:59 UTC
RemoteUrl: https://github.com/rformassspectrometry/RuSirius
RemoteRef: HEAD
RemoteSha: 0c68bdccec49612c6fd83f44d5fdda96cb7265a3
NeedsCompilation: no
Packaged: 2026-07-23 11:10:20 UTC; root
Author: Philippine Louail [aut, cre] (ORCID:
    <https://orcid.org/0009-0007-5429-6846>),
  Adriano Rutz [ctb] (ORCID: <https://orcid.org/0000-0003-0443-9902>),
  Markus Fleischauer [ctb],
  Jonas Emmert [ctb]
Maintainer: Philippine Louail <philippine.louail@eurac.edu>