Package: MsQuantitation 0.0.2

Laurent Gatto

MsQuantitation: Mass Spectrometry Quantitation

This package quantitates raw mass spectrometry data contained in Spectra objects into QFeaures instances.

Authors:Laurent Gatto [aut, cre]

MsQuantitation_0.0.2.tar.gz
MsQuantitation_0.0.2.zip(r-4.5)MsQuantitation_0.0.2.zip(r-4.4)MsQuantitation_0.0.2.zip(r-4.3)
MsQuantitation_0.0.2.tgz(r-4.5-any)MsQuantitation_0.0.2.tgz(r-4.4-any)MsQuantitation_0.0.2.tgz(r-4.3-any)
MsQuantitation_0.0.2.tar.gz(r-4.5-noble)MsQuantitation_0.0.2.tar.gz(r-4.4-noble)
MsQuantitation_0.0.2.tgz(r-4.4-emscripten)MsQuantitation_0.0.2.tgz(r-4.3-emscripten)
MsQuantitation.pdf |MsQuantitation.html✨
MsQuantitation/json (API)

# Install 'MsQuantitation' in R:

install.packages('MsQuantitation', repos = c('https://rformassspectrometry.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rformassspectrometry/msquantification/issues

On CRAN:

2.18 score 3 stars 22 exports 108 dependencies

Last updated 3 years agofrom:57bcf311e5. Checks:1 OK, 7 ERROR. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Feb 24 2025
R-4.5-win	ERROR	Feb 24 2025
R-4.5-mac	ERROR	Feb 24 2025
R-4.5-linux	ERROR	Feb 24 2025
R-4.4-win	ERROR	Feb 24 2025
R-4.4-mac	ERROR	Feb 24 2025
R-4.3-win	ERROR	Feb 24 2025
R-4.3-mac	ERROR	Feb 24 2025

Exports:iTRAQ4 iTRAQ5 iTRAQ8 iTRAQ9 mz QuantParam ReporterIons reporterNames reporterNames<-show TMT10 TMT10ETD TMT10HCD TMT11 TMT11HCD TMT16 TMT16HCD TMT6 TMT6b TMT7 TMT7b width

Dependencies:abind AnnotationFilter askpass base64enc BH Biobase BiocBaseUtils BiocGenerics BiocParallel bslib cachem cli clue cluster codetools colorspace cpp11 crayon crosstalk curl data.table DelayedArray digest dplyr evaluate fansi farver fastmap fontawesome formatR fs futile.logger futile.options generics GenomeInfoDb GenomeInfoDbData GenomicRanges ggplot2 glue gtable highr htmltools htmlwidgets httr igraph IRanges isoband jquerylib jsonlite knitr labeling lambda.r later lattice lazyeval lifecycle magrittr MASS Matrix MatrixGenerics matrixStats memoise MetaboCoreUtils mgcv mime MsCoreUtils MultiAssayExperiment munsell nlme openssl pillar pkgconfig plotly plyr promises ProtGenerics purrr QFeatures R6 rappdirs RColorBrewer Rcpp reshape2 rlang rmarkdown S4Arrays S4Vectors sass scales snow SparseArray Spectra stringi stringr SummarizedExperiment sys tibble tidyr tidyselect tinytex UCSC.utils utf8 vctrs viridisLite withr xfun XVector yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Labelled MS2 Quantitation	quantify_labelled_ms2
Labelled MS3 Quantitation	quantify_labelled_ms3
Quantitation of Raw MS Data	quantify quantify,Spectra quantify,Spectra-method
Quantiation Parameters	isEmpty,QuantParam-method QuantParam QuantParam-class
Reporter Ions Class	iTRAQ4 iTRAQ5 iTRAQ8 iTRAQ9 length,ReporterIons-method mz,ReporterIons-method names,ReporterIons-method ReporterIons ReporterIons-class reporterNames reporterNames<- show,ReporterIons-method TMT10 TMT10ETD TMT10HCD TMT11 TMT11HCD TMT16 TMT16HCD TMT6 TMT6b TMT7 TMT7b width,ReporterIons-method [,ReporterIons,ANY,ANY,ANY-method

Usage by other packages (reverse dependencies)