Package: MsQuantitation 0.0.2

Laurent Gatto

MsQuantitation: Mass Spectrometry Quantitation

This package quantitates raw mass spectrometry data contained in Spectra objects into QFeaures instances.

Authors:Laurent Gatto [aut, cre]

MsQuantitation_0.0.2.tar.gz
MsQuantitation_0.0.2.zip(r-4.7)MsQuantitation_0.0.2.zip(r-4.6)MsQuantitation_0.0.2.zip(r-4.5)
MsQuantitation_0.0.2.tgz(r-4.6-any)MsQuantitation_0.0.2.tgz(r-4.5-any)
MsQuantitation_0.0.2.tar.gz(r-4.7-any)MsQuantitation_0.0.2.tar.gz(r-4.6-any)
MsQuantitation_0.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MsQuantitation/json (API)

# Install 'MsQuantitation' in R:
install.packages('MsQuantitation', repos = c('https://rformassspectrometry.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rformassspectrometry/msquantification/issues

On CRAN:

Conda:

2.18 score 3 stars 22 exports 102 dependencies

Last updated from:57bcf311e5. Checks:7 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR292
source / vignettesOK277
linux-release-x86_64ERROR326
macos-release-arm64ERROR221
macos-oldrel-arm64ERROR221
windows-develERROR326
windows-releaseERROR340
windows-oldrelERROR391
wasm-releaseOK164

Exports:iTRAQ4iTRAQ5iTRAQ8iTRAQ9mzQuantParamReporterIonsreporterNamesreporterNames<-showTMT10TMT10ETDTMT10HCDTMT11TMT11HCDTMT16TMT16HCDTMT6TMT6bTMT7TMT7bwidth

Dependencies:abindAnnotationFilteraskpassbase64encBHBiobaseBiocBaseUtilsBiocGenericsBiocParallelbslibcachemcliclueclustercodetoolscpp11crosstalkcurldata.tableDelayedArraydigestdplyrevaluatefarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomicRangesggplot2gluegtablehighrhtmltoolshtmlwidgetshttrigraphIRangesisobandjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoiseMetaboCoreUtilsmimeMsCoreUtilsMultiAssayExperimentopensslotelpillarpkgconfigplotlyplyrpromisesProtGenericspurrrQFeaturesR6rappdirsRColorBrewerRcppreshape2rlangrmarkdownS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraySpectrastringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8vctrsviridisLitewithrxfunXVectoryaml

Readme and manuals

Help Manual

Help pageTopics
Labelled MS2 Quantitationquantify_labelled_ms2
Labelled MS3 Quantitationquantify_labelled_ms3
Quantitation of Raw MS Dataquantify quantify,Spectra quantify,Spectra-method
Quantiation ParametersisEmpty,QuantParam-method QuantParam QuantParam-class
Reporter Ions ClassiTRAQ4 iTRAQ5 iTRAQ8 iTRAQ9 length,ReporterIons-method mz,ReporterIons-method names,ReporterIons-method ReporterIons ReporterIons-class reporterNames reporterNames<- show,ReporterIons-method TMT10 TMT10ETD TMT10HCD TMT11 TMT11HCD TMT16 TMT16HCD TMT6 TMT6b TMT7 TMT7b width,ReporterIons-method [,ReporterIons,ANY,ANY,ANY-method