Package: MsQuantitation 0.0.2

Laurent Gatto

MsQuantitation: Mass Spectrometry Quantitation

This package quantitates raw mass spectrometry data contained in Spectra objects into QFeaures instances.

Authors:Laurent Gatto [aut, cre]

MsQuantitation_0.0.2.tar.gz
MsQuantitation_0.0.2.zip(r-4.7-any)MsQuantitation_0.0.2.zip(r-4.6-any)MsQuantitation_0.0.2.zip(r-4.5-any)
MsQuantitation_0.0.2.tgz(r-4.6-any)MsQuantitation_0.0.2.tgz(r-4.5-any)
MsQuantitation_0.0.2.tar.gz(r-4.7-any)MsQuantitation_0.0.2.tar.gz(r-4.6-any)
MsQuantitation_0.0.2.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MsQuantitation/json (API)

# Install 'MsQuantitation' in R:

install.packages('MsQuantitation', repos = c('https://rformassspectrometry.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rformassspectrometry/msquantification/issues

On CRAN:

2.18 score 3 stars 22 exports 102 dependencies

Last updated from:57bcf311e5. Checks:7 ERROR, 2 OK. Indexed: yes.

Target	Result	Time	Files	Syslog
linux-devel-x86_64	ERROR	332
source / vignettes	OK	245
linux-release-x86_64	ERROR	315
macos-release-arm64	ERROR	209
macos-oldrel-arm64	ERROR	224
windows-devel-x86_64	ERROR	329
windows-release-x86_64	ERROR	326
windows-oldrel-x86_64	ERROR	371
wasm-release	OK	193

Exports:iTRAQ4 iTRAQ5 iTRAQ8 iTRAQ9 mz QuantParam ReporterIons reporterNames reporterNames<-show TMT10 TMT10ETD TMT10HCD TMT11 TMT11HCD TMT16 TMT16HCD TMT6 TMT6b TMT7 TMT7b width

Dependencies:abind AnnotationFilter askpass base64enc BH Biobase BiocBaseUtils BiocGenerics BiocParallel bslib cachem cli clue cluster codetools cpp11 crosstalk curl data.table DelayedArray digest dplyr evaluate farver fastmap fontawesome formatR fs futile.logger futile.options generics GenomicRanges ggplot2 glue gtable highr htmltools htmlwidgets httr igraph IRanges isoband jquerylib jsonlite knitr labeling lambda.r later lattice lazyeval lifecycle magrittr MASS Matrix MatrixGenerics matrixStats memoise MetaboCoreUtils mime MsCoreUtils MultiAssayExperiment openssl otel pillar pkgconfig plotly plyr promises ProtGenerics purrr QFeatures R6 rappdirs RColorBrewer Rcpp reshape2 rlang rmarkdown S4Arrays S4Vectors S7 sass scales Seqinfo snow SparseArray Spectra stringi stringr SummarizedExperiment sys tibble tidyr tidyselect tinytex utf8 vctrs viridisLite withr xfun XVector yaml

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Labelled MS2 Quantitation	quantify_labelled_ms2
Labelled MS3 Quantitation	quantify_labelled_ms3
Quantitation of Raw MS Data	quantify quantify,Spectra quantify,Spectra-method
Quantiation Parameters	isEmpty,QuantParam-method QuantParam QuantParam-class
Reporter Ions Class	iTRAQ4 iTRAQ5 iTRAQ8 iTRAQ9 length,ReporterIons-method mz,ReporterIons-method names,ReporterIons-method ReporterIons ReporterIons-class reporterNames reporterNames<- show,ReporterIons-method TMT10 TMT10ETD TMT10HCD TMT11 TMT11HCD TMT16 TMT16HCD TMT6 TMT6b TMT7 TMT7b width,ReporterIons-method [,ReporterIons,ANY,ANY,ANY-method

Usage by other packages (reverse dependencies)