Package: MsQuantitation 0.0.2

Laurent Gatto

MsQuantitation: Mass Spectrometry Quantitation

This package quantitates raw mass spectrometry data contained in Spectra objects into QFeaures instances.

Authors:Laurent Gatto [aut, cre]

MsQuantitation_0.0.2.tar.gz
MsQuantitation_0.0.2.zip(r-4.5)MsQuantitation_0.0.2.zip(r-4.4)MsQuantitation_0.0.2.zip(r-4.3)
MsQuantitation_0.0.2.tgz(r-4.4-any)MsQuantitation_0.0.2.tgz(r-4.3-any)
MsQuantitation_0.0.2.tar.gz(r-4.5-noble)MsQuantitation_0.0.2.tar.gz(r-4.4-noble)
MsQuantitation_0.0.2.tgz(r-4.4-emscripten)MsQuantitation_0.0.2.tgz(r-4.3-emscripten)
MsQuantitation.pdf |MsQuantitation.html
MsQuantitation/json (API)

# Install 'MsQuantitation' in R:
install.packages('MsQuantitation', repos = c('https://rformassspectrometry.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/rformassspectrometry/msquantification/issues

On CRAN:

22 exports 3 stars 0.36 score 109 dependencies

Last updated 2 years agofrom:57bcf311e5. Checks:OK: 1 NOTE: 1 ERROR: 5. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 28 2024
R-4.5-winERRORAug 28 2024
R-4.5-linuxNOTEAug 28 2024
R-4.4-winERRORAug 28 2024
R-4.4-macERRORAug 28 2024
R-4.3-winERRORAug 28 2024
R-4.3-macERRORAug 28 2024

Exports:iTRAQ4iTRAQ5iTRAQ8iTRAQ9mzQuantParamReporterIonsreporterNamesreporterNames<-showTMT10TMT10ETDTMT10HCDTMT11TMT11HCDTMT16TMT16HCDTMT6TMT6bTMT7TMT7bwidth

Dependencies:abindAnnotationFilteraskpassbase64encBHBiobaseBiocBaseUtilsBiocGenericsBiocParallelbslibcachemcliclueclustercodetoolscolorspacecpp11crayoncrosstalkcurldata.tableDelayedArraydigestdplyrevaluatefansifarverfastmapfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicRangesggplot2gluegtablehighrhtmltoolshtmlwidgetshttrigraphIRangesisobandjquerylibjsonliteknitrlabelinglambda.rlaterlatticelazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoiseMetaboCoreUtilsmgcvmimeMsCoreUtilsMultiAssayExperimentmunsellnlmeopensslpillarpkgconfigplotlyplyrpromisesProtGenericspurrrQFeaturesR6rappdirsRColorBrewerRcppreshape2rlangrmarkdownS4ArraysS4VectorssassscalessnowSparseArraySpectrastringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexUCSC.utilsutf8vctrsviridisLitewithrxfunXVectoryamlzlibbioc

Readme and manuals

Help Manual

Help pageTopics
Labelled MS2 Quantitationquantify_labelled_ms2
Labelled MS3 Quantitationquantify_labelled_ms3
Quantitation of Raw MS Dataquantify quantify,Spectra quantify,Spectra-method
Quantiation ParametersisEmpty,QuantParam-method QuantParam QuantParam-class
Reporter Ions ClassiTRAQ4 iTRAQ5 iTRAQ8 iTRAQ9 length,ReporterIons-method mz,ReporterIons-method names,ReporterIons-method ReporterIons ReporterIons-class reporterNames reporterNames<- show,ReporterIons-method TMT10 TMT10ETD TMT10HCD TMT11 TMT11HCD TMT16 TMT16HCD TMT6 TMT6b TMT7 TMT7b width,ReporterIons-method [,ReporterIons,ANY,ANY,ANY-method