{
  "_id": "6a20327bcd65a98ecbd1081d",
  "Package": "MsQuantitation",
  "Title": "Mass Spectrometry Quantitation",
  "Version": "0.0.2",
  "Authors@R": "person(\"Laurent\", \"Gatto\",\nemail = \"laurent.gatto@uclouvain.be\",\ncomment = c(ORCID = \"0000-0002-1520-2268\"),\nrole = c(\"aut\", \"cre\"))",
  "Description": "This package quantitates raw mass spectrometry data\ncontained in Spectra objects into QFeaures instances.",
  "License": "Artistic-2.0",
  "VignetteBuilder": "knitr",
  "URL": "https://github.com/RforMassSpectrometry/MsQuantification",
  "BugReports": "https://github.com/RforMassSpectrometry/MsQuantification/issues",
  "Encoding": "UTF-8",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.1.1",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "cmake libglpk-dev make libicu-dev libuv1-dev\nlibxml2-dev libssl-dev zlib1g-dev",
  "Repository": "https://rformassspectrometry.r-universe.dev",
  "Date/Publication": "2022-06-01 19:58:40 UTC",
  "RemoteUrl": "https://github.com/rformassspectrometry/MsQuantitation",
  "RemoteRef": "HEAD",
  "RemoteSha": "57bcf311e58038f011e4f8d36cc825954bf925c7",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-03 13:48:14 UTC",
    "User": "root"
  },
  "Author": "Laurent Gatto [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-1520-2268>)",
  "Maintainer": "Laurent Gatto <laurent.gatto@uclouvain.be>",
  "MD5sum": "187ba2efaf1eae02fcb79fc8b6193503",
  "_user": "rformassspectrometry",
  "_type": "src",
  "_file": "MsQuantitation_0.0.2.tar.gz",
  "_fileid": "a88ec921110282da592778023908b7fa1f2c41f6e911f30c15ab72b7eea79013",
  "_filesize": 128843,
  "_sha256": "a88ec921110282da592778023908b7fa1f2c41f6e911f30c15ab72b7eea79013",
  "_created": "2026-06-03T13:48:14.000Z",
  "_published": "2026-06-03T13:56:11.814Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 79309704986,
      "time": 292,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7386577533"
    },
    {
      "job": 79309704944,
      "time": 326,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7386592599"
    },
    {
      "job": 79309705168,
      "time": 221,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7386546408"
    },
    {
      "job": 79309705032,
      "time": 221,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7386546883"
    },
    {
      "job": 79308710879,
      "time": 277,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7386446020"
    },
    {
      "job": 79309705103,
      "time": 164,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7386520045"
    },
    {
      "job": 79309705201,
      "time": 326,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7386592841"
    },
    {
      "job": 79309705118,
      "time": 391,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7386622020"
    },
    {
      "job": 79309705269,
      "time": 340,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7386599639"
    }
  ],
  "_buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888815742",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/rformassspectrometry/MsQuantitation",
  "_commit": {
    "id": "57bcf311e58038f011e4f8d36cc825954bf925c7",
    "author": "Laurent Gatto <laurent.gatto@gmail.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Update check-bioc.yml",
    "time": 1654113520
  },
  "_maintainer": {
    "name": "Laurent Gatto",
    "email": "laurent.gatto@uclouvain.be",
    "login": "lgatto",
    "mastodon": "@lgatto@fediscience.org",
    "orcid": "0000-0002-1520-2268",
    "description": "Open science, reproducible research, bioinformatics, computational biology, proteomics, more omics, emacs, a lot of R, running and parenting.\n",
    "uuid": 384198
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "Spectra",
      "role": "Depends"
    },
    {
      "package": "QFeatures",
      "role": "Depends"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "BiocGenerics",
      "role": "Imports"
    },
    {
      "package": "ProtGenerics",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "BiocParallel",
      "role": "Imports"
    },
    {
      "package": "MsCoreUtils",
      "role": "Imports"
    },
    {
      "package": "SummarizedExperiment",
      "role": "Imports"
    },
    {
      "package": "msdata",
      "role": "Suggests"
    },
    {
      "package": "mzR",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "rformassspectrometry",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [],
  "_tags": [],
  "_stars": 3,
  "_contributors": [
    {
      "user": "lgatto",
      "count": 59,
      "uuid": 384198
    }
  ],
  "_userbio": {
    "uuid": 51361942,
    "type": "organization",
    "name": "RforMassSpectrometry",
    "description": "R packages for mass spectrometry"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MsQuantitation"
  },
  "_devurl": "https://github.com/rformassspectrometry/msquantification",
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MsQuantitation.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "iTRAQ4",
    "iTRAQ5",
    "iTRAQ8",
    "iTRAQ9",
    "mz",
    "QuantParam",
    "ReporterIons",
    "reporterNames",
    "reporterNames<-",
    "show",
    "TMT10",
    "TMT10ETD",
    "TMT10HCD",
    "TMT11",
    "TMT11HCD",
    "TMT16",
    "TMT16HCD",
    "TMT6",
    "TMT6b",
    "TMT7",
    "TMT7b",
    "width"
  ],
  "_help": [
    {
      "page": "quantify_labelled_ms2",
      "title": "Labelled MS2 Quantitation",
      "topics": [
        "quantify_labelled_ms2"
      ]
    },
    {
      "page": "quantify_labelled_ms3",
      "title": "Labelled MS3 Quantitation",
      "topics": [
        "quantify_labelled_ms3"
      ]
    },
    {
      "page": "quantify-methods.Rd",
      "title": "Quantitation of Raw MS Data",
      "topics": [
        "quantify",
        "quantify,Spectra",
        "quantify,Spectra-method"
      ]
    },
    {
      "page": "QuantParam",
      "title": "Quantiation Parameters",
      "topics": [
        "isEmpty,QuantParam-method",
        "QuantParam",
        "QuantParam-class"
      ]
    },
    {
      "page": "ReporterIons",
      "title": "Reporter Ions Class",
      "topics": [
        "iTRAQ4",
        "iTRAQ5",
        "iTRAQ8",
        "iTRAQ9",
        "length,ReporterIons-method",
        "mz,ReporterIons-method",
        "names,ReporterIons-method",
        "ReporterIons",
        "ReporterIons-class",
        "reporterNames",
        "reporterNames<-",
        "show,ReporterIons-method",
        "TMT10",
        "TMT10ETD",
        "TMT10HCD",
        "TMT11",
        "TMT11HCD",
        "TMT16",
        "TMT16HCD",
        "TMT6",
        "TMT6b",
        "TMT7",
        "TMT7b",
        "width,ReporterIons-method",
        "[,ReporterIons,ANY,ANY,ANY-method"
      ]
    }
  ],
  "_readme": "https://github.com/rformassspectrometry/MsQuantitation/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "AnnotationFilter",
    "askpass",
    "base64enc",
    "BH",
    "Biobase",
    "BiocBaseUtils",
    "BiocGenerics",
    "BiocParallel",
    "bslib",
    "cachem",
    "cli",
    "clue",
    "cluster",
    "codetools",
    "cpp11",
    "crosstalk",
    "curl",
    "data.table",
    "DelayedArray",
    "digest",
    "dplyr",
    "evaluate",
    "farver",
    "fastmap",
    "fontawesome",
    "formatR",
    "fs",
    "futile.logger",
    "futile.options",
    "generics",
    "GenomicRanges",
    "ggplot2",
    "glue",
    "gtable",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httr",
    "igraph",
    "IRanges",
    "isoband",
    "jquerylib",
    "jsonlite",
    "knitr",
    "labeling",
    "lambda.r",
    "later",
    "lattice",
    "lazyeval",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "MetaboCoreUtils",
    "mime",
    "MsCoreUtils",
    "MultiAssayExperiment",
    "openssl",
    "otel",
    "pillar",
    "pkgconfig",
    "plotly",
    "plyr",
    "promises",
    "ProtGenerics",
    "purrr",
    "QFeatures",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "Rcpp",
    "reshape2",
    "rlang",
    "rmarkdown",
    "S4Arrays",
    "S4Vectors",
    "S7",
    "sass",
    "scales",
    "Seqinfo",
    "snow",
    "SparseArray",
    "Spectra",
    "stringi",
    "stringr",
    "SummarizedExperiment",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "tinytex",
    "utf8",
    "vctrs",
    "viridisLite",
    "withr",
    "xfun",
    "XVector",
    "yaml"
  ],
  "_score": 2.1760912590556813,
  "_indexed": true,
  "_nocasepkg": "msquantitation",
  "_universes": [
    "rformassspectrometry",
    "lgatto"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.0.2",
      "date": "2026-06-03T13:51:21.000Z",
      "distro": "noble",
      "commit": "57bcf311e58038f011e4f8d36cc825954bf925c7",
      "fileid": "6ee9bed02ca1f5b29d2f26c3756ad88adfe0d7cf39d89824e5e44b931df316c9",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888815742"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.0.2",
      "date": "2026-06-03T13:51:32.000Z",
      "distro": "noble",
      "commit": "57bcf311e58038f011e4f8d36cc825954bf925c7",
      "fileid": "43a0dd0795b7b357c5ab087a79e9e894b964c950e7d576ce96891cfb4248f773",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888815742"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.0.2",
      "date": "2026-06-03T13:50:43.000Z",
      "commit": "57bcf311e58038f011e4f8d36cc825954bf925c7",
      "fileid": "1e3e33c54f232808b3c5850ba473886bfcb505423a7e60d662123f32dabd12f7",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888815742"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.0.2",
      "date": "2026-06-03T13:50:31.000Z",
      "commit": "57bcf311e58038f011e4f8d36cc825954bf925c7",
      "fileid": "5101bf8bb8b1bdd918bb6dcc478afc89ca88b9ee5215d37d89d2dbf6381420e0",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888815742"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.0.2",
      "date": "2026-06-03T13:51:31.000Z",
      "commit": "57bcf311e58038f011e4f8d36cc825954bf925c7",
      "fileid": "ec482ae90727b9d885ce9b4c9f465c5e76fb6bc5325b11ccb6a19ba0c1ac5227",
      "status": "success",
      "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888815742"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.0.2",
      "date": "2026-06-03T13:50:19.000Z",
      "commit": "57bcf311e58038f011e4f8d36cc825954bf925c7",
      "fileid": "2d85eee2d059ccff19ae7eef08ace734b8ab6a9a0af2be8c8db2f8f80747ce5a",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888815742"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.0.2",
      "date": "2026-06-03T13:50:56.000Z",
      "commit": "57bcf311e58038f011e4f8d36cc825954bf925c7",
      "fileid": "3bc288290fc2b9df9a243963ce635e0992d950e4f4db61574abeef009e62e250",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888815742"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.0.2",
      "date": "2026-06-03T13:50:43.000Z",
      "commit": "57bcf311e58038f011e4f8d36cc825954bf925c7",
      "fileid": "a8bee15e5da0cca2eb147c46b063f355074c02f8146a633952d92febe46ade84",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888815742"
    }
  ]
}