Package: MsBackendMongoDb 0.97.4

Johannes Rainer

MsBackendMongoDb: NoSQL-based Mass Spectrometry Data Backend

Mass spectrometry (MS) data backend for data storage in NoSQL MongoDB dagabases. Objects from this package expand the data storage and handling infrastructure of the Spectra Bioconductor package. This package adds support to store and retrieve MS data from MongoDB databases.

Authors:Ahlam Mentag [aut], Johannes Rainer [aut, cre]

MsBackendMongoDb_0.97.4.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MsBackendMongoDb/json (API)

# Install 'MsBackendMongoDb' in R:
install.packages('MsBackendMongoDb', repos = c('https://rformassspectrometry.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rformassspectrometry/msbackendmongodb/issues

On CRAN:

Conda:

infrastructuremassspectrometrymetabolomicsdataimportproteomics

2.30 score 19 exports 31 dependencies

Last updated from:bde4f4a8fb. Checks:8 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develERROR167
source / vignettesERROR221
linux-releaseERROR229
macos-releaseERROR151
macos-oldrelERROR105
windows-develERROR159
windows-releaseERROR105
windows-oldrelERROR145
wasm-releaseOK136

Exports:backendInitializeconnectMsBackendMongoDbdataStorageextractByIndexintensityintensity<-MsBackendMongoDbmzmz<-peaksDatapeaksVariablesresetshowspectraDataspectraNamesspectraNames<-start_mongodbstop_mongodbsupportsSetBackend

Dependencies:askpassBHBiocGenericsBiocParallelclueclustercodetoolscpp11data.tableDBIfastmatchformatRfsfutile.loggerfutile.optionsgenericsIRangesjsonlitelambda.rMASSMetaboCoreUtilsmimemongoliteMsCoreUtilsopensslProtGenericsRcppS4VectorssnowSpectrasys

Readme and manuals

Help Manual

Help pageTopics
Create a connection to MongoDbconnectMsBackendMongoDb
'Spectra' MS backend storing data in a MongoDb databasebackendInitialize,MsBackendMongoDb-method dataStorage,MsBackendMongoDb-method extractByIndex,MsBackendMongoDb,ANY-method extractByIndex,MsBackendMongoDb-method intensity,MsBackendMongoDb-method intensity<-,MsBackendMongoDb-method MsBackendMongoDb MsBackendMongoDb-class mz,MsBackendMongoDb-method mz<-,MsBackendMongoDb-method peaksData,MsBackendMongoDb-method peaksVariables,MsBackendMongoDb-method reset,MsBackendMongoDb-method show,MsBackendMongoDb-method spectraData,MsBackendMongoDb-method spectraNames,MsBackendMongoDb-method spectraNames<-,MsBackendMongoDb-method supportsSetBackend,MsBackendMongoDb-method [,MsBackendMongoDb-method
Start and stop MongoDB instancesstart_mongodb stop_mongodb