{ "_id": "6a203155cd65a98ecbd101b9", "Package": "MsBackendMongoDb", "Title": "NoSQL-based Mass Spectrometry Data Backend", "Version": "0.97.3", "Authors@R": "c(person(given = \"Ahlam\", family = \"Mentag\",\nemail = \"ahlammentag8@gmail.com\",\ncomment = c(ORCID = \"0009-0008-5438-7067\"),\nrole = \"aut\"),\nperson(given = \"Johannes\", family = \"Rainer\",\nemail = \"Johannes.Rainer@eurac.edu\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-6977-7147\")))", "Description": "Mass spectrometry (MS) data backend for data storage in\nNoSQL MongoDB dagabases. Objects from this package expand the\ndata storage and handling infrastructure of the Spectra\nBioconductor package. This package adds support to store and\nretrieve MS data from MongoDB databases.", "License": "Artistic-2.0", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "BugReports": "https://github.com/RforMassSpectrometry/MsBackendMongoDb/issues", "URL": "https://github.com/RforMassSpectrometry/MsBackendMongoDb", "biocViews": "Infrastructure, MassSpectrometry, Metabolomics, DataImport,\nProteomics", "Roxygen": "list(markdown=TRUE)", "RoxygenNote": "7.3.3", "Config/pak/sysreqs": "cmake make libuv1-dev libssl-dev libsasl2-dev", "Repository": "https://rformassspectrometry.r-universe.dev", "Date/Publication": "2026-01-07 12:08:58 UTC", "RemoteUrl": "https://github.com/rformassspectrometry/msbackendmongodb", "RemoteRef": "HEAD", "RemoteSha": "8666897aa2e56390b42dc4ba2dd21b71af1693c6", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-03 13:47:17 UTC", "User": "root" }, "Author": "Ahlam Mentag [aut] (ORCID: ),\nJohannes Rainer [aut, cre] (ORCID:\n)", "Maintainer": "Johannes Rainer ", "MD5sum": "342c1715dc9222657142088983faf6da", "_user": "rformassspectrometry", "_type": "src", "_file": "MsBackendMongoDb_0.97.3.tar.gz", "_fileid": "498103692be4e20654be3d7485725ed1104b3697eb4d72830dced48ce187dc23", "_filesize": 107074, "_sha256": "498103692be4e20654be3d7485725ed1104b3697eb4d72830dced48ce187dc23", "_created": "2026-06-03T13:47:17.000Z", "_published": "2026-06-03T13:51:17.604Z", "_distro": "noble", "_jobs": [ { "job": 79309447359, "time": 195, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "7386502013" }, { "job": 79309447556, "time": 189, "config": "linux-release-x86_64", "r": "4.6.0", "check": "ERROR", "artifact": "7386499651" }, { "job": 79309447358, "time": 171, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "7386491709" }, { "job": 79309447282, "time": 143, "config": "macos-release-arm64", "r": "4.6.0", "check": "ERROR", "artifact": "7386479155" }, { "job": 79308661007, "time": 220, "config": "source", "r": "4.6.0", "check": "ERROR", "artifact": "7386414222" }, { "job": 79309447350, "time": 143, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7386479032" }, { "job": 79309447119, "time": 159, "config": "windows-devel", "r": "4.7.0", "check": "ERROR", "artifact": "7386485761" }, { "job": 79309447211, "time": 169, "config": "windows-oldrel", "r": "4.5.3", "check": "ERROR", "artifact": "7386491628" }, { "job": 79309447272, "time": 151, "config": "windows-release", "r": "4.6.0", "check": "ERROR", "artifact": "7386482410" } ], "_buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888805380", "_status": "failure", "_host": "GitHub-Actions", "_upstream": "https://github.com/rformassspectrometry/msbackendmongodb", "_commit": { "id": "8666897aa2e56390b42dc4ba2dd21b71af1693c6", "author": "Ahlam Mentag <105757304+Ahlammentag@users.noreply.github.com>", "committer": "GitHub ", "message": "Merge pull request #14 from rformassspectrometry/jomain\n\nAdd vignette, reformat code and ensure core variables have correct data type", "time": 1767787738 }, "_maintainer": { "name": "Johannes Rainer", "email": "johannes.rainer@eurac.edu", "login": "jorainer", "mastodon": "@jorainer@fediscience.org", "bluesky": "@jorainer.bsky.social", "linkedin": "in/jorainer", "orcid": "0000-0002-6977-7147", "description": "Computational Mass Spectrometry and Metabolomics, mostly; love R coding and Emacs; member of the Bioconductor Community Advisory Board.", "uuid": 5506112 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.5.0", "role": "Depends" }, { "package": "Spectra", "version": ">= 1.19.8", "role": "Depends" }, { "package": "jsonlite", "role": "Imports" }, { "package": "mongolite", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "MsCoreUtils", "role": "Imports" }, { "package": "ProtGenerics", "role": "Imports" }, { "package": "IRanges", "role": "Imports" }, { "package": "fastmatch", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "DBI", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "version": ">= 1.1.0", "role": "Suggests" }, { "package": "roxygen2", "role": "Suggests" }, { "package": "BiocStyle", "version": ">= 2.5.19", "role": "Suggests" }, { "package": "msdata", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "mzR", "role": "Suggests" } ], "_owner": "rformassspectrometry", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-49", "n": 1 }, { "week": "2025-52", "n": 4 }, { "week": "2026-02", "n": 1 } ], "_tags": [], "_topics": [ "infrastructure", "massspectrometry", "metabolomics", "dataimport", "proteomics" ], "_stars": 0, "_contributors": [ { "user": "jorainer", "count": 37, "uuid": 5506112 }, { "user": "ahlammentag", "count": 10, "uuid": 105757304 } ], "_userbio": { "uuid": 51361942, "type": "organization", "name": "RforMassSpectrometry", "description": "R packages for mass spectrometry" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MsBackendMongoDb" }, "_devurl": "https://github.com/rformassspectrometry/msbackendmongodb", "_searchresults": 0, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/MsBackendMongoDb.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_cranurl": false, "_exports": [ "backendInitialize", "connectMsBackendMongoDb", "dataStorage", "extractByIndex", "intensity", "intensity<-", "MsBackendMongoDb", "mz", "mz<-", "peaksData", "peaksVariables", "reset", "show", "spectraData", "spectraNames", "spectraNames<-", "supportsSetBackend" ], "_help": [ { "page": "connectMsBackendMongoDb", "title": "Create a connection to MongoDb", "topics": [ "connectMsBackendMongoDb" ] }, { "page": "MsBackendMongoDb", "title": "'Spectra' MS backend storing data in a MongoDb database", "topics": [ "backendInitialize,MsBackendMongoDb-method", "dataStorage,MsBackendMongoDb-method", "extractByIndex,MsBackendMongoDb,ANY-method", "extractByIndex,MsBackendMongoDb-method", "intensity,MsBackendMongoDb-method", "intensity<-,MsBackendMongoDb-method", "MsBackendMongoDb", "MsBackendMongoDb-class", "mz,MsBackendMongoDb-method", "mz<-,MsBackendMongoDb-method", "peaksData,MsBackendMongoDb-method", "peaksVariables,MsBackendMongoDb-method", "reset,MsBackendMongoDb-method", "show,MsBackendMongoDb-method", "spectraData,MsBackendMongoDb-method", "spectraNames,MsBackendMongoDb-method", "spectraNames<-,MsBackendMongoDb-method", "supportsSetBackend,MsBackendMongoDb-method", "[,MsBackendMongoDb-method" ] } ], "_readme": "https://github.com/rformassspectrometry/msbackendmongodb/raw/HEAD/README.md", "_rundeps": [ "askpass", "BH", "BiocGenerics", "BiocParallel", "clue", "cluster", "codetools", "cpp11", "data.table", "DBI", "fastmatch", "formatR", "fs", "futile.logger", "futile.options", "generics", "IRanges", "jsonlite", "lambda.r", "MASS", "MetaboCoreUtils", "mime", "mongolite", "MsCoreUtils", "openssl", "ProtGenerics", "Rcpp", "S4Vectors", "snow", "Spectra", "sys" ], "_score": 2.1760912590556813, "_indexed": true, "_nocasepkg": "msbackendmongodb", "_universes": [ "rformassspectrometry", "jorainer" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "0.97.3", "date": "2026-06-03T13:50:07.000Z", "distro": "noble", "commit": "8666897aa2e56390b42dc4ba2dd21b71af1693c6", "fileid": "b7f83ffe23f4ce637b50fd33843e1acdabb256a784e4b1e5577ae8d493cb16d5", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888805380" }, { "r": "4.6.0", "os": "linux", "version": "0.97.3", "date": "2026-06-03T13:50:02.000Z", "distro": "noble", "commit": "8666897aa2e56390b42dc4ba2dd21b71af1693c6", "fileid": "5030b680041401c62a3c0760da80a510dbab807d33e7503f182c74b6306933c8", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888805380" }, { "r": "4.5.3", "os": "mac", "version": "0.97.3", "date": "2026-06-03T13:49:50.000Z", "commit": "8666897aa2e56390b42dc4ba2dd21b71af1693c6", "fileid": "cecbc491533981cbe3d7bc30706cc2378f20ebbb4a785bc81c83a0600f698311", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888805380" }, { "r": "4.6.0", "os": "mac", "version": "0.97.3", "date": "2026-06-03T13:49:22.000Z", "commit": "8666897aa2e56390b42dc4ba2dd21b71af1693c6", "fileid": "0aa12483c35ca8e618c5aa15ea04303f88af66898ab5d44b7e52a7c896620c61", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888805380" }, { "r": "4.6.0", "os": "wasm", "version": "0.97.3", "date": "2026-06-03T13:50:05.000Z", "commit": "8666897aa2e56390b42dc4ba2dd21b71af1693c6", "fileid": "b41adfa3cc098b49bcd45fcda0bb6bb0b54797db18008b3ef72afd78c2ab2353", "status": "success", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888805380" }, { "r": "4.7.0", "os": "win", "version": "0.97.3", "date": "2026-06-03T13:49:14.000Z", "commit": "8666897aa2e56390b42dc4ba2dd21b71af1693c6", "fileid": "ebbe2227f78b71348e15f579c65ac89bb8eaf80cba045218a9c7021ff91b3a5a", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888805380" }, { "r": "4.5.3", "os": "win", "version": "0.97.3", "date": "2026-06-03T13:49:29.000Z", "commit": "8666897aa2e56390b42dc4ba2dd21b71af1693c6", "fileid": "d29741521e5a3fb15550c36d388a7f84b4a14b7282b7389f290c7e3baff4fe74", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888805380" }, { "r": "4.6.0", "os": "win", "version": "0.97.3", "date": "2026-06-03T13:48:59.000Z", "commit": "8666897aa2e56390b42dc4ba2dd21b71af1693c6", "fileid": "b908ff3d22b75e64591f6ddbe1ca9cd80f3f026fa7eeaebad546064b114f4f74", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888805380" } ] }