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  "Package": "MsBackendMongoDb",
  "Title": "NoSQL-based Mass Spectrometry Data Backend",
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  "Description": "Mass spectrometry (MS) data backend for data storage in\nNoSQL MongoDB dagabases. Objects from this package expand the\ndata storage and handling infrastructure of the Spectra\nBioconductor package. This package adds support to store and\nretrieve MS data from MongoDB databases.",
  "License": "GPL-3",
  "Encoding": "UTF-8",
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  "BugReports": "https://github.com/RforMassSpectrometry/MsBackendMongoDb/issues",
  "URL": "https://github.com/RforMassSpectrometry/MsBackendMongoDb",
  "biocViews": "Infrastructure, MassSpectrometry, Metabolomics, DataImport,\nProteomics",
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  "Repository": "https://rformassspectrometry.r-universe.dev",
  "Date/Publication": "2026-07-03 06:38:36 UTC",
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  "_created": "2026-07-23T11:08:30.000Z",
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