{
  "_id": "6a26e05924555f66ed52797a",
  "Package": "MsBackendMongoDb",
  "Title": "NoSQL-based Mass Spectrometry Data Backend",
  "Version": "0.97.3",
  "Authors@R": "c(person(given = \"Ahlam\", family = \"Mentag\",\nemail = \"ahlammentag8@gmail.com\",\ncomment = c(ORCID = \"0009-0008-5438-7067\"),\nrole = \"aut\"),\nperson(given = \"Johannes\", family = \"Rainer\",\nemail = \"Johannes.Rainer@eurac.edu\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-6977-7147\")))",
  "Description": "Mass spectrometry (MS) data backend for data storage in\nNoSQL MongoDB dagabases. Objects from this package expand the\ndata storage and handling infrastructure of the Spectra\nBioconductor package. This package adds support to store and\nretrieve MS data from MongoDB databases.",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "BugReports": "https://github.com/RforMassSpectrometry/MsBackendMongoDb/issues",
  "URL": "https://github.com/RforMassSpectrometry/MsBackendMongoDb",
  "biocViews": "Infrastructure, MassSpectrometry, Metabolomics, DataImport,\nProteomics",
  "Roxygen": "list(markdown=TRUE)",
  "RoxygenNote": "7.3.3",
  "Config/pak/sysreqs": "cmake make libuv1-dev libssl-dev libsasl2-dev",
  "Repository": "https://rformassspectrometry.r-universe.dev",
  "Date/Publication": "2026-01-07 12:08:58 UTC",
  "RemoteUrl": "https://github.com/rformassspectrometry/msbackendmongodb",
  "RemoteRef": "HEAD",
  "RemoteSha": "8666897aa2e56390b42dc4ba2dd21b71af1693c6",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-06-08 15:27:04 UTC",
    "User": "root"
  },
  "Author": "Ahlam Mentag [aut] (ORCID: <https://orcid.org/0009-0008-5438-7067>),\nJohannes Rainer [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-6977-7147>)",
  "Maintainer": "Johannes Rainer <Johannes.Rainer@eurac.edu>",
  "MD5sum": "9f7729968d2a5f53ac502bd80b33eb93",
  "_user": "rformassspectrometry",
  "_type": "src",
  "_file": "MsBackendMongoDb_0.97.3.tar.gz",
  "_fileid": "203ee23d9065d67567a53afa2aa10598b14aeb5dac4649fd365c274405ee9c4a",
  "_filesize": 107069,
  "_sha256": "203ee23d9065d67567a53afa2aa10598b14aeb5dac4649fd365c274405ee9c4a",
  "_created": "2026-06-08T15:27:04.000Z",
  "_published": "2026-06-08T15:31:37.012Z",
  "_distro": "noble",
  "_jobs": [
    {
      "job": 80132078982,
      "time": 233,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7484922931"
    },
    {
      "job": 80132078626,
      "time": 198,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7484907019"
    },
    {
      "job": 80132078770,
      "time": 154,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7484887199"
    },
    {
      "job": 80132078608,
      "time": 156,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7484887816"
    },
    {
      "job": 80131244193,
      "time": 228,
      "config": "source",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7484820665"
    },
    {
      "job": 80132078627,
      "time": 136,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7484879591"
    },
    {
      "job": 80132078670,
      "time": 194,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "7484897555"
    },
    {
      "job": 80132078647,
      "time": 169,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "ERROR",
      "artifact": "7484894002"
    },
    {
      "job": 80132079008,
      "time": 162,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7484891272"
    }
  ],
  "_buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148036728",
  "_status": "failure",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/rformassspectrometry/msbackendmongodb",
  "_commit": {
    "id": "8666897aa2e56390b42dc4ba2dd21b71af1693c6",
    "author": "Ahlam Mentag <105757304+Ahlammentag@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #14 from rformassspectrometry/jomain\n\nAdd vignette, reformat code and ensure core variables have correct data type",
    "time": 1767787738
  },
  "_maintainer": {
    "name": "Johannes Rainer",
    "email": "johannes.rainer@eurac.edu",
    "login": "jorainer",
    "mastodon": "@jorainer@fediscience.org",
    "bluesky": "@jorainer.bsky.social",
    "linkedin": "in/jorainer",
    "orcid": "0000-0002-6977-7147",
    "description": "Computational Mass Spectrometry and Metabolomics, mostly; love R coding and Emacs; member of the Bioconductor Community Advisory Board.",
    "uuid": 5506112
  },
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.5.0",
      "role": "Depends"
    },
    {
      "package": "Spectra",
      "version": ">= 1.19.8",
      "role": "Depends"
    },
    {
      "package": "jsonlite",
      "role": "Imports"
    },
    {
      "package": "mongolite",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "MsCoreUtils",
      "role": "Imports"
    },
    {
      "package": "ProtGenerics",
      "role": "Imports"
    },
    {
      "package": "IRanges",
      "role": "Imports"
    },
    {
      "package": "fastmatch",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "DBI",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "version": ">= 1.1.0",
      "role": "Suggests"
    },
    {
      "package": "roxygen2",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "version": ">= 2.5.19",
      "role": "Suggests"
    },
    {
      "package": "msdata",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "mzR",
      "role": "Suggests"
    }
  ],
  "_owner": "rformassspectrometry",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-49",
      "n": 1
    },
    {
      "week": "2025-52",
      "n": 4
    },
    {
      "week": "2026-02",
      "n": 1
    }
  ],
  "_tags": [],
  "_topics": [
    "infrastructure",
    "massspectrometry",
    "metabolomics",
    "dataimport",
    "proteomics"
  ],
  "_stars": 0,
  "_contributors": [
    {
      "user": "jorainer",
      "count": 37,
      "uuid": 5506112
    },
    {
      "user": "ahlammentag",
      "count": 10,
      "uuid": 105757304
    }
  ],
  "_userbio": {
    "uuid": 51361942,
    "type": "organization",
    "name": "RforMassSpectrometry",
    "description": "R packages for mass spectrometry"
  },
  "_downloads": {
    "count": 0,
    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MsBackendMongoDb"
  },
  "_devurl": "https://github.com/rformassspectrometry/msbackendmongodb",
  "_searchresults": 0,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MsBackendMongoDb.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_cranurl": false,
  "_exports": [
    "backendInitialize",
    "connectMsBackendMongoDb",
    "dataStorage",
    "extractByIndex",
    "intensity",
    "intensity<-",
    "MsBackendMongoDb",
    "mz",
    "mz<-",
    "peaksData",
    "peaksVariables",
    "reset",
    "show",
    "spectraData",
    "spectraNames",
    "spectraNames<-",
    "supportsSetBackend"
  ],
  "_help": [
    {
      "page": "connectMsBackendMongoDb",
      "title": "Create a connection to MongoDb",
      "topics": [
        "connectMsBackendMongoDb"
      ]
    },
    {
      "page": "MsBackendMongoDb",
      "title": "'Spectra' MS backend storing data in a MongoDb database",
      "topics": [
        "backendInitialize,MsBackendMongoDb-method",
        "dataStorage,MsBackendMongoDb-method",
        "extractByIndex,MsBackendMongoDb,ANY-method",
        "extractByIndex,MsBackendMongoDb-method",
        "intensity,MsBackendMongoDb-method",
        "intensity<-,MsBackendMongoDb-method",
        "MsBackendMongoDb",
        "MsBackendMongoDb-class",
        "mz,MsBackendMongoDb-method",
        "mz<-,MsBackendMongoDb-method",
        "peaksData,MsBackendMongoDb-method",
        "peaksVariables,MsBackendMongoDb-method",
        "reset,MsBackendMongoDb-method",
        "show,MsBackendMongoDb-method",
        "spectraData,MsBackendMongoDb-method",
        "spectraNames,MsBackendMongoDb-method",
        "spectraNames<-,MsBackendMongoDb-method",
        "supportsSetBackend,MsBackendMongoDb-method",
        "[,MsBackendMongoDb-method"
      ]
    }
  ],
  "_readme": "https://github.com/rformassspectrometry/msbackendmongodb/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "BH",
    "BiocGenerics",
    "BiocParallel",
    "clue",
    "cluster",
    "codetools",
    "cpp11",
    "data.table",
    "DBI",
    "fastmatch",
    "formatR",
    "fs",
    "futile.logger",
    "futile.options",
    "generics",
    "IRanges",
    "jsonlite",
    "lambda.r",
    "MASS",
    "MetaboCoreUtils",
    "mime",
    "mongolite",
    "MsCoreUtils",
    "openssl",
    "ProtGenerics",
    "Rcpp",
    "S4Vectors",
    "snow",
    "Spectra",
    "sys"
  ],
  "_score": 2.1760912590556813,
  "_indexed": true,
  "_nocasepkg": "msbackendmongodb",
  "_universes": [
    "rformassspectrometry",
    "jorainer"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "0.97.3",
      "date": "2026-06-08T15:30:25.000Z",
      "distro": "noble",
      "commit": "8666897aa2e56390b42dc4ba2dd21b71af1693c6",
      "fileid": "2674079b58e923d2d4bf15ef58d2cfb3eb54e0a4ce6de0df25c06dc775717ca5",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148036728"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "0.97.3",
      "date": "2026-06-08T15:29:57.000Z",
      "distro": "noble",
      "commit": "8666897aa2e56390b42dc4ba2dd21b71af1693c6",
      "fileid": "fa0d350fd77d0c48b42fc492cf358407de1179ff045d1c8a251e253652075f33",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148036728"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "0.97.3",
      "date": "2026-06-08T15:29:23.000Z",
      "commit": "8666897aa2e56390b42dc4ba2dd21b71af1693c6",
      "fileid": "faeacdda2d9fc20ad6896e3c639cd6b0a2952eef2549f5ba5a0231aa40235225",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148036728"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "0.97.3",
      "date": "2026-06-08T15:29:13.000Z",
      "commit": "8666897aa2e56390b42dc4ba2dd21b71af1693c6",
      "fileid": "0ac0d9f25c6c4334393fed644c73f960b9d6c38845974f5d7fa7906dcb00d5be",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148036728"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "0.97.3",
      "date": "2026-06-08T15:29:41.000Z",
      "commit": "8666897aa2e56390b42dc4ba2dd21b71af1693c6",
      "fileid": "aed5405bc18121c95c4576982cf93f5d4de2f9b643088fe608adfea9e9fdbf81",
      "status": "success",
      "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148036728"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "0.97.3",
      "date": "2026-06-08T15:29:17.000Z",
      "commit": "8666897aa2e56390b42dc4ba2dd21b71af1693c6",
      "fileid": "dc881041aa9c1ddd3832aac9bb66cbc3b6d07ad504800ffa2b8f5ab483a6db4b",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148036728"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "0.97.3",
      "date": "2026-06-08T15:29:07.000Z",
      "commit": "8666897aa2e56390b42dc4ba2dd21b71af1693c6",
      "fileid": "b47bc7485cea021885f77b31945d1d5e6b846318241e8f544689dabfa2923162",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148036728"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "0.97.3",
      "date": "2026-06-08T15:29:01.000Z",
      "commit": "8666897aa2e56390b42dc4ba2dd21b71af1693c6",
      "fileid": "af7d0493db24a732e84e7df3827fc7a138b68eb2b02c684e60025fa4b35f87b6",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148036728"
    }
  ]
}