Package: MsBackendMetabolomicsWorkbench 0.1.7

Gabriele Tomè

MsBackendMetabolomicsWorkbench: Retrieve Mass Spectrometry Data from Metabolomics Workbench

Metabolomics Workbench is one of the main public repositories for storage of metabolomics experiments. The MsBackendMetabolomicsWorkbench package provides functionality to retrieve and represent mass spectrometry (MS) data from Metabolomics Workbench. Data files are downloaded and cached locally avoiding repetitive downloads. MS data from metabolomics experiments can thus be directly and seamlessly integrated into R-based analysis workflows with the Spectra and MsBackendMetabolomicsWorkbench package.

Authors:Gabriele Tomè [aut, cre], Philippine Louail [aut], Johannes Rainer [aut]

MsBackendMetabolomicsWorkbench_0.1.7.tar.gz
MsBackendMetabolomicsWorkbench_0.1.7.zip(r-4.7)MsBackendMetabolomicsWorkbench_0.1.7.zip(r-4.6)MsBackendMetabolomicsWorkbench_0.1.7.zip(r-4.5)
MsBackendMetabolomicsWorkbench_0.1.7.tgz(r-4.6-any)MsBackendMetabolomicsWorkbench_0.1.7.tgz(r-4.5-any)
MsBackendMetabolomicsWorkbench_0.1.7.tar.gz(r-4.7-any)MsBackendMetabolomicsWorkbench_0.1.7.tar.gz(r-4.6-any)
MsBackendMetabolomicsWorkbench_0.1.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
MsBackendMetabolomicsWorkbench/json (API)

# Install 'MsBackendMetabolomicsWorkbench' in R:
install.packages('MsBackendMetabolomicsWorkbench', repos = c('https://rformassspectrometry.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rformassspectrometry/msbackendmetabolomicsworkbench/issues

On CRAN:

Conda:

infrastructuremassspectrometrymetabolomicsdataimportproteomics

3.40 score 12 exports 70 dependencies

Last updated from:cc24e09e35. Checks:7 OK, 2 ERROR. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK367
source / vignettesOK244
linux-release-x86_64OK440
macos-release-arm64ERROR232
macos-oldrel-arm64OK261
windows-develOK590
windows-releaseERROR312
windows-oldrelOK430
wasm-releaseOK144

Exports:backendInitializebackendRequiredSpectraVariablesMsBackendMetabolomicsWorkbenchmwb_cached_data_filesmwb_delete_cachemwb_ftp_downloadmwb_ftp_list_filesmwb_list_filesmwb_metadatamwb_rest_requestmwb_syncmwb_sync_data_files

Dependencies:archiveaskpassBHBiocFileCacheBiocGenericsBiocParallelbitbit64blobcachemcliclueclustercodetoolscpp11crayoncurldata.tableDBIdbplyrdplyrfastmapfilelockformatRfsfutile.loggerfutile.optionsgenericsgluehmshttrhttr2IRangesjsonlitelambda.rlifecyclemagrittrMASSmemoiseMetaboCoreUtilsmimeMsCoreUtilsopensslpillarpkgconfigplyrprettyunitsprogressProtGenericspurrrR6rappdirsRcpprlangRSQLitervestS4VectorsselectrsnowSpectrastringistringrsystibbletidyrtidyselectutf8vctrswithrxml2

Retrieve and Use Mass Spectrometry Data from Metabolomics Workbench

Rendered fromMsBackendMetabolomicsWorkbench.Rmdusingknitr::rmarkdownon Jun 23 2026.

Last update: 2026-04-21
Started: 2026-04-07

Readme and manuals

Help Manual

Help pageTopics
Utility functions for the Metabolomics Workbench repositoryMetabolomicsWorkbench-utils mwb_cached_data_files mwb_delete_cache mwb_ftp_download mwb_ftp_list_files mwb_list_files mwb_metadata mwb_rest_request mwb_sync_data_files
MsBackend representing MS data from Metabolomics WorkbenchbackendInitialize,MsBackendMetabolomicsWorkbench-method backendRequiredSpectraVariables,MsBackendMetabolomicsWorkbench-method MsBackendMetabolomicsWorkbench MsBackendMetabolomicsWorkbench-class mwb_sync