{
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  "Package": "MsBackendMetabolomicsWorkbench",
  "Title": "Retrieve Mass Spectrometry Data from Metabolomics Workbench",
  "Version": "0.99.1",
  "Authors@R": "c(person(given = \"Gabriele\", family = \"Tomè\",\nemail = \"gabriele.tome@eurac.edu\",\nrole = c(\"aut\",\"cre\"),\ncomment = c(ORCID = \"0000-0002-3976-6068\",\nfnd = \"MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded by the Autonomous Province of Bolzano under the Joint Projects South Tyrol–Germany 2025 program.\")),\nperson(given = \"Philippine\", family = \"Louail\",\nemail = \"philippine.louail@eurac.edu\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0009-0007-5429-6846\")),\nperson(given = \"Johannes\", family = \"Rainer\",\nemail = \"Johannes.Rainer@eurac.edu\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-6977-7147\")))",
  "Description": "Metabolomics Workbench is one of the main public\nrepositories for storage of metabolomics experiments. The\nMsBackendMetabolomicsWorkbench package provides functionality\nto retrieve and represent mass spectrometry (MS) data from\nMetabolomics Workbench. Data files are downloaded and cached\nlocally avoiding repetitive downloads. MS data from\nmetabolomics experiments can thus be directly and seamlessly\nintegrated into R-based analysis workflows with the Spectra and\nMsBackendMetabolomicsWorkbench package.",
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  "Encoding": "UTF-8",
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  "BugReports": "https://github.com/RforMassSpectrometry/MsBackendMetabolomicsWorkbench/issues",
  "URL": "https://github.com/RforMassSpectrometry/MsBackendMetabolomicsWorkbench",
  "biocViews": "Infrastructure, MassSpectrometry, Metabolomics, DataImport,\nProteomics",
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  "Repository": "https://rformassspectrometry.r-universe.dev",
  "Date/Publication": "2026-07-22 09:38:07 UTC",
  "RemoteUrl": "https://github.com/rformassspectrometry/msbackendmetabolomicsworkbench",
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    "User": "root"
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  "Author": "Gabriele Tomè [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3976-6068>, fnd: MetaRbolomics4Galaxy\nproject (CUP: D53C25001030003) co-funded by the Autonomous Province\nof Bolzano under the Joint Projects South Tyrol–Germany 2025\nprogram.),\nPhilippine Louail [aut] (ORCID:\n<https://orcid.org/0009-0007-5429-6846>),\nJohannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>)",
  "Maintainer": "Gabriele Tomè <gabriele.tome@eurac.edu>",
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  "_created": "2026-07-23T11:08:35.000Z",
  "_published": "2026-07-23T11:24:37.621Z",
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    "message": "Merge pull request #9 from rformassspectrometry/gabri\n\nrefactor: update following Bioconductor review comments",
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    "description": "Researcher @ Institute of Biomedicine - EURAC\nBioinformatician, computational biologist",
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  "_owner": "rformassspectrometry",
  "_selfowned": true,
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  "_updates": [
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  "_tags": [],
  "_topics": [
    "infrastructure",
    "massspectrometry",
    "metabolomics",
    "dataimport",
    "proteomics"
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    "backendRequiredSpectraVariables",
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      "page": "MetabolomicsWorkbench-utils",
      "title": "Utility functions for the Metabolomics Workbench repository",
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        "Installation",
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