Package: MsBackendMassIVE 0.99.1

Gabriele Tomè

MsBackendMassIVE: Retrieve Mass Spectrometry Data from MassIVE

MassIVE is one of the main public repositories for storage of metabolomics experiments. The MsBackendMassIVE package provides functionality to retrieve and represent mass spectrometry (MS) data from MassIVE. Data files are downloaded and cached locally avoiding repetitive downloads. MS data from metabolomics experiments can thus be directly and seamlessly integrated into R-based analysis workflows with the Spectra and MsBackendMassIVE package.

Authors:Gabriele Tomè [aut, cre], Philippine Louail [aut], Johannes Rainer [aut]

MsBackendMassIVE_0.99.1.tar.gz
MsBackendMassIVE_0.99.1.zip(r-4.7)MsBackendMassIVE_0.99.1.zip(r-4.6)MsBackendMassIVE_0.99.1.zip(r-4.5)
MsBackendMassIVE_0.99.1.tgz(r-4.6-any)MsBackendMassIVE_0.99.1.tgz(r-4.5-any)
MsBackendMassIVE_0.99.1.tar.gz(r-4.7-any)MsBackendMassIVE_0.99.1.tar.gz(r-4.6-any)
MsBackendMassIVE_0.99.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MsBackendMassIVE/json (API)

# Install 'MsBackendMassIVE' in R:

install.packages('MsBackendMassIVE', repos = c('https://rformassspectrometry.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rformassspectrometry/msbackendmassive/issues

On CRAN:

infrastructure massspectrometry metabolomics dataimport proteomics

4.04 score 1 stars 2 scripts 14 exports 68 dependencies

Last updated from:ea44823ded. Checks:9 OK. Indexed: yes.

Target	Result	Time
linux-devel-x86_64	OK	619
source / vignettes	OK	265
linux-release-x86_64	OK	607
macos-release-arm64	OK	435
macos-oldrel-arm64	OK	422
windows-devel	OK	668
windows-release	OK	709
windows-oldrel	OK	682
wasm-release	OK	139

Exports:backendInitialize backendRequiredSpectraVariables gnps2_query gnps2_usi_download_link massive_cached_data_files massive_delete_cache massive_download_file massive_ftp_path massive_list_files massive_number_files massive_param_file massive_sync massive_sync_data_files MsBackendMassIVE

Dependencies:askpass BH BiocFileCache BiocGenerics BiocParallel bit bit64 blob cachem cli clue cluster codetools cpp11 crayon curl data.table DBI dbplyr dplyr fastmap filelock formatR fs futile.logger futile.options generics glue hms httr httr2 IRanges jsonlite lambda.r lifecycle magrittr MASS memoise MetaboCoreUtils mime MsCoreUtils openssl pillar pkgconfig prettyunits progress ProtGenerics purrr R6 rappdirs Rcpp rlang RSQLite rvest S4Vectors selectr snow Spectra stringi stringr sys tibble tidyr tidyselect utf8 vctrs withr xml2

Retrieve and Use Mass Spectrometry Data from MassIVE

Introduction | Installation | Importing MS Data from MassIVE | General use and information retrieval from MassIVE | Session information

Rendered fromMsBackendMassIVE.Rmdusingknitr::rmarkdown

Last update: 2026-06-18
Started: 2026-03-18

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Query the GNPS2 datasetchache resource	GNPS2-utils gnps2_query gnps2_usi_download_link
Utility functions for the MassIVE repository	MassIVE-utils massive_cached_data_files massive_delete_cache massive_download_file massive_ftp_path massive_list_files massive_number_files massive_param_file massive_sync_data_files
MsBackend representing MS data from MassIVE	backendInitialize,MsBackendMassIVE-method backendRequiredSpectraVariables,MsBackendMassIVE-method massive_sync MsBackendMassIVE MsBackendMassIVE-class