{
  "_id": "6a61f95235834fefe99ebff9",
  "Package": "MsBackendMassIVE",
  "Title": "Retrieve Mass Spectrometry Data from MassIVE",
  "Version": "0.99.1",
  "Authors@R": "c(person(given = \"Gabriele\", family = \"Tomè\",\nemail = \"gabriele.tome@eurac.edu\",\nrole = c(\"aut\",\"cre\"),\ncomment = c(ORCID = \"0000-0002-3976-6068\",\nfnd = \"MetaRbolomics4Galaxy project (CUP: D53C25001030003) co-funded by the Autonomous Province of Bolzano under the Joint Projects South Tyrol–Germany 2025 program.\")),\nperson(given = \"Philippine\", family = \"Louail\",\nemail = \"philippine.louail@eurac.edu\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0009-0007-5429-6846\")),\nperson(given = \"Johannes\", family = \"Rainer\",\nemail = \"Johannes.Rainer@eurac.edu\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0000-0002-6977-7147\")))",
  "Description": "MassIVE is one of the main public repositories for storage\nof metabolomics experiments. The MsBackendMassIVE package\nprovides functionality to retrieve and represent mass\nspectrometry (MS) data from MassIVE. Data files are downloaded\nand cached locally avoiding repetitive downloads. MS data from\nmetabolomics experiments can thus be directly and seamlessly\nintegrated into R-based analysis workflows with the Spectra and\nMsBackendMassIVE package.",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "VignetteBuilder": "knitr",
  "BugReports": "https://github.com/RforMassSpectrometry/MsBackendMassIVE/issues",
  "URL": "https://github.com/RforMassSpectrometry/MsBackendMassIVE",
  "biocViews": "Infrastructure, MassSpectrometry, Metabolomics, DataImport,\nProteomics",
  "Roxygen": "list(markdown=TRUE)",
  "RoxygenNote": "8.0.0",
  "Config/pak/sysreqs": "cmake make libicu-dev libuv1-dev libxml2-dev\nlibssl-dev",
  "Repository": "https://rformassspectrometry.r-universe.dev",
  "Date/Publication": "2026-06-18 12:00:47 UTC",
  "RemoteUrl": "https://github.com/rformassspectrometry/msbackendmassive",
  "RemoteRef": "HEAD",
  "RemoteSha": "ea44823ded826c11a4463194d952fc1b84c5b4eb",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-23 11:08:24 UTC",
    "User": "root"
  },
  "Author": "Gabriele Tomè [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-3976-6068>, fnd: MetaRbolomics4Galaxy\nproject (CUP: D53C25001030003) co-funded by the Autonomous Province\nof Bolzano under the Joint Projects South Tyrol–Germany 2025\nprogram.),\nPhilippine Louail [aut] (ORCID:\n<https://orcid.org/0009-0007-5429-6846>),\nJohannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>)",
  "Maintainer": "Gabriele Tomè <gabriele.tome@eurac.edu>",
  "_user": "rformassspectrometry",
  "_type": "src",
  "_file": "MsBackendMassIVE_0.99.1.tar.gz",
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  "_filesize": 168228,
  "_sha256": "010ac2ad4e04d5c0067a504bd55bc06d3aeea6e644d82a10c6af919b3d4ca467",
  "_expires": "2026-10-31T11:21:52.000Z",
  "_created": "2026-07-23T11:08:24.000Z",
  "_published": "2026-07-24T10:45:54.243Z",
  "_jobs": [
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  "_buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/30001728483",
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  "_upstream": "https://github.com/rformassspectrometry/msbackendmassive",
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    "author": "Gabriele Tomè <39188419+gabrieletome@users.noreply.github.com>",
    "committer": "GitHub <noreply@github.com>",
    "message": "Merge pull request #27 from rformassspectrometry/bioc_review\n\nfix: vignette render. Drop stringr dependance",
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    "name": "Gabriele Tomè",
    "email": "gabriele.tome@eurac.edu",
    "login": "gabrieletome",
    "orcid": "0000-0002-3976-6068",
    "description": "Researcher @ Institute of Biomedicine - EURAC\nBioinformatician, computational biologist",
    "uuid": 39188419
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  "_registered": true,
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      "package": "R",
      "version": ">= 4.2.0",
      "role": "Depends"
    },
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      "package": "Spectra",
      "version": ">= 1.15.12",
      "role": "Depends"
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      "role": "Imports"
    },
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      "package": "xml2",
      "role": "Imports"
    },
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      "package": "ProtGenerics",
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    },
    {
      "package": "BiocFileCache",
      "role": "Imports"
    },
    {
      "package": "S4Vectors",
      "role": "Imports"
    },
    {
      "package": "methods",
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    },
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    },
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      "package": "progress",
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    },
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    },
    {
      "package": "rvest",
      "role": "Imports"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "mzR",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    }
  ],
  "_owner": "rformassspectrometry",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2026-03",
      "n": 1
    },
    {
      "week": "2026-11",
      "n": 2
    },
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  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "0.99.1",
      "bioc": "3.24"
    }
  ],
  "_topics": [
    "infrastructure",
    "massspectrometry",
    "metabolomics",
    "dataimport",
    "proteomics"
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "gabrieletome",
      "count": 44,
      "uuid": 39188419
    },
    {
      "user": "jorainer",
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    },
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      "user": "philouail",
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  "_userbio": {
    "uuid": 51361942,
    "type": "organization",
    "name": "RforMassSpectrometry",
    "followers": 105,
    "description": "R packages for mass spectrometry"
  },
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    "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MsBackendMassIVE"
  },
  "_devurl": "https://github.com/rformassspectrometry/msbackendmassive",
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  "_rbuild": "4.6.1",
  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/MsBackendMassIVE.html",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/rformassspectrometry/msbackendmassive",
  "_realowner": "bioc",
  "_cranurl": true,
  "_exports": [
    "backendInitialize",
    "backendRequiredSpectraVariables",
    "gnps2_query",
    "gnps2_usi_download_link",
    "massive_cached_data_files",
    "massive_delete_cache",
    "massive_download_file",
    "massive_ftp_path",
    "massive_list_files",
    "massive_number_files",
    "massive_param_file",
    "massive_sync",
    "massive_sync_data_files",
    "MsBackendMassIVE"
  ],
  "_help": [
    {
      "page": "GNPS2-utils",
      "title": "Query the GNPS2 datasetchache resource",
      "topics": [
        "GNPS2-utils",
        "gnps2_query",
        "gnps2_usi_download_link"
      ]
    },
    {
      "page": "MassIVE-utils",
      "title": "Utility functions for the MassIVE repository",
      "topics": [
        "MassIVE-utils",
        "massive_cached_data_files",
        "massive_delete_cache",
        "massive_download_file",
        "massive_ftp_path",
        "massive_list_files",
        "massive_number_files",
        "massive_param_file",
        "massive_sync_data_files"
      ]
    },
    {
      "page": "MsBackendMassIVE",
      "title": "MsBackend representing MS data from MassIVE",
      "topics": [
        "backendInitialize,MsBackendMassIVE-method",
        "backendRequiredSpectraVariables,MsBackendMassIVE-method",
        "massive_sync",
        "MsBackendMassIVE",
        "MsBackendMassIVE-class"
      ]
    }
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      "title": "Retrieve and Use Mass Spectrometry Data from MassIVE",
      "engine": "knitr::rmarkdown",
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        "Installation",
        "Importing MS Data from MassIVE",
        "General use and information retrieval from MassIVE",
        "Session information"
      ],
      "created": "2026-03-18 07:44:02",
      "modified": "2026-06-18 12:00:47",
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