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  "Title": "MassQL support for Spectra",
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  "Description": "The Mass Spec Query Language (MassQL) is a domain-specific\nlanguage enabling to express a query and retrieve mass\nspectrometry (MS) data in a more natural and understandable way\nfor MS users. It is inspired by SQL and is by design\nprogramming language agnostic. The SpectraQL package adds\nsupport for the MassQL query language to R, in particular to MS\ndata represented by Spectra objects. Users can thus apply\nMassQL expressions to analyze and retrieve specific data from\nSpectra objects.",
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