{ "_id": "6a202f59cd65a98ecbd0e86b", "Package": "Spectra", "Title": "Spectra Infrastructure for Mass Spectrometry Data", "Version": "1.23.2", "Description": "The Spectra package defines an efficient infrastructure\nfor storing and handling mass spectrometry spectra and\nfunctionality to subset, process, visualize and compare spectra\ndata. It provides different implementations (backends) to store\nmass spectrometry data. These comprise backends tuned for fast\ndata access and processing and backends for very large data\nsets ensuring a small memory footprint.", "Authors@R": "c(person(given = \"RforMassSpectrometry Package Maintainer\",\nemail = \"maintainer@rformassspectrometry.org\",\nrole = \"cre\"),\nperson(given = \"Laurent\", family = \"Gatto\",\nemail = \"laurent.gatto@uclouvain.be\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-1520-2268\")),\nperson(given = \"Johannes\", family = \"Rainer\",\nemail = \"Johannes.Rainer@eurac.edu\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-6977-7147\")),\nperson(given = \"Sebastian\", family = \"Gibb\",\nemail = \"mail@sebastiangibb.de\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0001-7406-4443\")),\nperson(given = \"Philippine\", family = \"Louail\",\nemail = \"philippine.louail@eurac.edu\",\nrole = c(\"aut\"),\ncomment = c(ORCID = \"0009-0007-5429-6846\")),\nperson(given = \"Jan\", family = \"Stanstrup\",\nemail = \"stanstrup@gmail.com\",\nrole = \"ctb\",\ncomment = c(ORCID = \"0000-0003-0541-7369\")),\nperson(given = \"Nir\", family = \"Shahaf\",\nemail = \"gabbianon@gmail.com\",\nrole = \"ctb\"),\nperson(given = \"Mar\", family = \"Garcia-Aloy\",\nemail = \"mar.garcia@fmach.it\",\ncomment = c(ORCID = \"0000-0002-1330-6610\"),\nrole = \"ctb\"),\nperson(given = \"Guillaume\", family = \"Deflandre\",\nemail = \"guillaume.deflandre@uclouvain.be\",\ncomment = c(ORCID = \"0009-0008-1257-2416\"),\nrole = \"ctb\"),\nperson(given = \"Ahlam\", family = \"Mentag\",\nemail = \"ahlammentag8@gmail.com\",\ncomment = c(ORCID = \"0009-0008-5438-7067\"),\nrole = \"ctb\"))", "License": "Artistic-2.0", "LazyData": "false", "VignetteBuilder": "knitr", "BugReports": "https://github.com/RforMassSpectrometry/Spectra/issues", "URL": "https://github.com/RforMassSpectrometry/Spectra", "biocViews": "Infrastructure, Proteomics, MassSpectrometry, Metabolomics", "Encoding": "UTF-8", "Roxygen": "list(markdown=TRUE)", "Collate": "'hidden_aliases.R' 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"Author": "RforMassSpectrometry Package Maintainer [cre],\nLaurent Gatto [aut] (ORCID: ),\nJohannes Rainer [aut] (ORCID: ),\nSebastian Gibb [aut] (ORCID: ),\nPhilippine Louail [aut] (ORCID:\n),\nJan Stanstrup [ctb] (ORCID: ),\nNir Shahaf [ctb],\nMar Garcia-Aloy [ctb] (ORCID: ),\nGuillaume Deflandre [ctb] (ORCID:\n),\nAhlam Mentag [ctb] (ORCID: )", "Maintainer": "RforMassSpectrometry Package Maintainer ", "MD5sum": "e0bf2d065eb4386d4abbf8bc0956107f", "_user": "rformassspectrometry", "_type": "src", "_file": "Spectra_1.23.2.tar.gz", "_fileid": "196721d150596c15cf0a57b080957f4249761fd78bbca922fc729fec0511ee8c", "_filesize": 1524080, "_sha256": "196721d150596c15cf0a57b080957f4249761fd78bbca922fc729fec0511ee8c", "_created": "2026-06-03T13:22:37.000Z", "_published": "2026-06-03T13:42:49.858Z", "_distro": "noble", "_jobs": [ { "job": 79304346863, "time": 615, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7386051473" }, { "job": 79304346906, "time": 611, "config": 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variables", "topics": [ "fillCoreSpectraVariables" ] }, { "page": "filterFourierTransformArtefacts", "title": "Fast fourier transform artefact filter", "topics": [ "fft_spectrum", "filterFourierTransformArtefacts" ] }, { "page": "filterPeaksRanges", "title": "Filter peaks based on spectra and peaks variable ranges", "topics": [ "filterPeaksRanges" ] }, { "page": "fragmentGroupIndex", "title": "Mass fragmentation collections of each full scan", "topics": [ "fragmentGroupIndex" ] }, { "page": "joinPeaks", "title": "Join (map) peaks of two spectra", "topics": [ "joinPeaks", "joinPeaksGnps", "joinPeaksNone" ] }, { "page": "MsBackend", "title": "Mass spectrometry data backends", "topics": [ "$,MsBackend-method", "$<-,MsBackend-method", "acquisitionNum,MsBackend-method", "backendBpparam", "backendBpparam,MsBackend-method", "backendInitialize", "backendInitialize,MsBackend-method", "backendInitialize,MsBackendDataFrame-method", "backendInitialize,MsBackendMemory-method", 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