{ "_id": "6a203172cd65a98ecbd101fb", "Package": "MsBackendMsp", "Title": "Mass Spectrometry Data Backend for NIST msp Files", "Version": "1.15.1", "Authors@R": "c(person(given = \"Neumann\", family = \"Steffen\",\nrole = c(\"aut\"),\nemail = \"sneumann@ipb-halle.de\",\ncomment = c(ORCID = \"0000-0002-7899-7192\")),\nperson(given = \"Johannes\", family = \"Rainer\",\nemail = \"Johannes.Rainer@eurac.edu\",\nrole = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0002-6977-7147\")),\nperson(given = \"Michael\", family = \"Witting\",\nrole = c(\"ctb\"),\nemail = \"michael.witting@helmholtz-muenchen.de\",\ncomment = c(ORCID = \"0000-0002-1462-4426\"))\n)", "Description": "Mass spectrometry (MS) data backend supporting import and\nhandling of MS/MS spectra from NIST MSP Format (msp) files.\nImport of data from files with different MSP *flavours* is\nsupported. Objects from this package add support for MSP files\nto Bioconductor's Spectra package. This package is thus not\nsupposed to be used without the Spectra package that provides a\ncomplete infrastructure for MS data handling.", "License": "Artistic-2.0", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "BugReports": "https://github.com/RforMassSpectrometry/MsBackendMsp/issues", "URL": "https://github.com/RforMassSpectrometry/MsBackendMsp", "biocViews": "Infrastructure, Proteomics, MassSpectrometry, Metabolomics,\nDataImport", "Roxygen": "list(markdown=TRUE)", "RoxygenNote": "7.3.3", "Collate": "'hidden_aliases.R' 'MsBackendMsp.R' 'functions-msp.R'", "Config/pak/sysreqs": "cmake make libuv1-dev", "Repository": "https://rformassspectrometry.r-universe.dev", "Date/Publication": "2026-03-03 07:00:04 UTC", "RemoteUrl": "https://github.com/rformassspectrometry/msbackendmsp", "RemoteRef": "HEAD", "RemoteSha": "506e13ce81627a9f3c342ca77f225da88fff9c33", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-03 13:47:48 UTC", "User": "root" }, "Author": "Neumann Steffen [aut] (ORCID: ),\nJohannes Rainer [aut, cre] (ORCID:\n),\nMichael Witting [ctb] (ORCID: )", "Maintainer": "Johannes Rainer ", "MD5sum": "298fcbccc1a1f92555e69d1899276c06", "_user": "rformassspectrometry", "_type": "src", "_file": "MsBackendMsp_1.15.1.tar.gz", "_fileid": "9c8cbe01bccce1a3fc17b514b49e6d3194e6a3181615ca6a12e7315cded318dc", "_filesize": 136272, "_sha256": "9c8cbe01bccce1a3fc17b514b49e6d3194e6a3181615ca6a12e7315cded318dc", "_created": "2026-06-03T13:47:48.000Z", "_published": "2026-06-03T13:51:46.121Z", "_distro": "noble", "_jobs": [ { "job": 79309537733, "time": 194, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7386513372" }, { "job": 79309537720, "time": 191, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7386511658" }, { "job": 79309537744, "time": 97, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7386470304" }, { "job": 79309537658, "time": 137, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7386488188" }, { "job": 79308767452, "time": 218, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7386426291" }, { "job": 79309537564, "time": 140, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7386489487" }, { "job": 79309537679, "time": 151, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7386493844" }, { "job": 79309537736, "time": 127, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7386483657" }, { "job": 79309537730, "time": 136, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7386487353" } ], "_buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888807785", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/rformassspectrometry/msbackendmsp", "_commit": { "id": "506e13ce81627a9f3c342ca77f225da88fff9c33", "author": "Johannes Rainer <5506112+jorainer@users.noreply.github.com>", "committer": "GitHub ", "message": "Merge pull request #21 from rformassspectrometry/jomain\n\nfix: ensure results are data.frame", "time": 1772521204 }, "_maintainer": { "name": "Johannes Rainer", "email": "johannes.rainer@eurac.edu", "login": "jorainer", "mastodon": "@jorainer@fediscience.org", "bluesky": "@jorainer.bsky.social", "linkedin": "in/jorainer", "orcid": "0000-0002-6977-7147", "description": "Computational Mass Spectrometry and Metabolomics, mostly; love R coding and Emacs; member of the Bioconductor Community Advisory Board.", "uuid": 5506112 }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.1.0", "role": "Depends" }, { "package": "Spectra", "version": ">= 1.5.14", "role": "Depends" }, { "package": "ProtGenerics", "version": ">= 1.35.3", "role": "Imports" }, { "package": "BiocParallel", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "IRanges", "role": "Imports" }, { "package": "MsCoreUtils", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "version": ">= 1.1.0", "role": "Suggests" }, { "package": "roxygen2", "role": "Suggests" }, { "package": "BiocStyle", "version": ">= 2.5.19", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "rformassspectrometry", "_selfowned": true, "_usedby": 2, "_updates": [ { "week": "2026-10", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.17.0", "bioc": "3.24" }, { "branch": "release", "version": "1.16.0", "bioc": "3.23" } ], "_topics": [ "infrastructure", "proteomics", "massspectrometry", "metabolomics", "dataimport", "mass-spectrometry" ], "_stars": 5, "_contributors": [ { "user": "jorainer", "count": 58, "uuid": 5506112 }, { "user": "jwokaty", "count": 14, "uuid": 1744257 }, { "user": "sneumann", "count": 10, "uuid": 195385 }, { "user": "michaelwitting", "count": 9, "uuid": 2734706 }, { "user": "nturaga", "count": 2, "uuid": 2746443 } ], "_userbio": { "uuid": 51361942, "type": "organization", "name": "RforMassSpectrometry", "description": "R packages for mass spectrometry" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MsBackendMsp" }, "_devurl": "https://github.com/rformassspectrometry/msbackendmsp", "_searchresults": 46, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/MsBackendMsp.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/rformassspectrometry/msbackendmsp", "_realowner": "bioc", "_cranurl": true, "_exports": [ "backendInitialize", "export", "MsBackendMsp", "readMsp", "spectraVariableMapping" ], "_help": [ { "page": "MsBackendMsp", "title": "MS data backend for msp files", "topics": [ "backendInitialize,MsBackendMsp-method", "export,MsBackendMsp-method", "MsBackendMsp", "MsBackendMsp-class", "spectraVariableMapping,MsBackendMsp-method" ] }, { "page": "readMsp", "title": "Reading MSP files", "topics": [ "readMsp" ] } ], "_pkglogo": "https://github.com/rformassspectrometry/msbackendmsp/raw/HEAD/logo.png", "_readme": "https://github.com/rformassspectrometry/msbackendmsp/raw/HEAD/README.md", "_rundeps": [ "BH", "BiocGenerics", "BiocParallel", "clue", "cluster", "codetools", "cpp11", "data.table", "formatR", "fs", "futile.logger", "futile.options", "generics", "IRanges", "lambda.r", "MASS", "MetaboCoreUtils", "MsCoreUtils", "ProtGenerics", "Rcpp", "S4Vectors", "snow", "Spectra" ], "_vignettes": [ { "source": "MsBackendMsp.Rmd", "filename": "MsBackendMsp.html", "title": "MsBackendMsp", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installation", "MSP file format", "Importing MS/MS data from MSP files", "Session information", "References" ], "created": "2022-02-02 15:34:28", "modified": "2024-04-04 09:37:38", "commits": 3 } ], "_score": 6.440909082065218, "_indexed": false, "_nocasepkg": "msbackendmsp", "_universes": [ "rformassspectrometry" ], "_indexurl": "https://bioc.r-universe.dev/MsBackendMsp", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.15.1", "date": "2026-06-03T13:50:28.000Z", "distro": "noble", "commit": "506e13ce81627a9f3c342ca77f225da88fff9c33", "fileid": "64504b4395b61dd02583cdaaa34131d6d6e3dedd857ffe3c3d26a010b7538f5f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888807785" }, { "r": "4.6.0", "os": "linux", "version": "1.15.1", "date": "2026-06-03T13:50:23.000Z", "distro": "noble", "commit": "506e13ce81627a9f3c342ca77f225da88fff9c33", "fileid": "26769cd108d87f80ee932f46733e043f10a265730d93aa2a6e46aa477d7b2789", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888807785" }, { "r": "4.5.3", "os": "mac", "version": "1.15.1", "date": "2026-06-03T13:49:17.000Z", "commit": "506e13ce81627a9f3c342ca77f225da88fff9c33", "fileid": "ac1bdb2220a51ad9031a2feb29746a5e79d1166b08f30d47d183e3ee9f1a95c3", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888807785" }, { "r": "4.6.0", "os": "mac", "version": "1.15.1", "date": "2026-06-03T13:49:40.000Z", "commit": "506e13ce81627a9f3c342ca77f225da88fff9c33", "fileid": "79d3961bb7c9a2198d6f58cef7c61eac5ef409a3b36d94a5b033b309aa067d2a", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888807785" }, { "r": "4.6.0", "os": "wasm", "version": "1.15.1", "date": "2026-06-03T13:50:29.000Z", "commit": "506e13ce81627a9f3c342ca77f225da88fff9c33", "fileid": "b27e37bd22c72b1def8dd5c33cf8f1db1b7b7e528b40e99f970afe6964a269c8", "status": "success", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888807785" }, { "r": "4.7.0", "os": "win", "version": "1.15.1", "date": "2026-06-03T13:49:40.000Z", "commit": "506e13ce81627a9f3c342ca77f225da88fff9c33", "fileid": "ef3185533cdd227417d460ee5529157b56f443d3f9ebaf942fec0a91895bef2f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888807785" }, { "r": "4.5.3", "os": "win", "version": "1.15.1", "date": "2026-06-03T13:49:17.000Z", "commit": "506e13ce81627a9f3c342ca77f225da88fff9c33", "fileid": "5e0a47f8130448613993406fdf2d5e6f57494ecc69010f74cc2a67c506cd4556", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888807785" }, { "r": "4.6.0", "os": "win", "version": "1.15.1", "date": "2026-06-03T13:49:32.000Z", "commit": "506e13ce81627a9f3c342ca77f225da88fff9c33", "fileid": "75b5a80975f37c7c8928e29e0a6cbdc17aaadf08b1ac8720c0fe5d7076ba6aad", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/26888807785" } ] }