{ "_id": "6a26e02324555f66ed52793a", "Package": "MsBackendMgf", "Title": "Mass Spectrometry Data Backend for Mascot Generic Format (mgf)\nFiles", "Version": "1.19.1", "Authors@R": "c(person(given = \"RforMassSpectrometry Package Maintainer\",\nemail = \"maintainer@rformassspectrometry.org\",\nrole = \"cre\"),\nperson(given = \"Laurent\", family = \"Gatto\",\nrole = \"aut\",\nemail = \"laurent.gatto@uclouvain.be\",\ncomment = c(ORCID = \"0000-0002-1520-2268\")),\nperson(given = \"Johannes\", family = \"Rainer\",\nemail = \"Johannes.Rainer@eurac.edu\",\nrole = \"aut\",\ncomment = c(ORCID = \"0000-0002-6977-7147\")),\nperson(given = \"Sebastian\", family = \"Gibb\",\ncomment = c(ORCID = \"0000-0001-7406-4443\"),\nemail = \"mail@sebastiangibb.de\",\nrole = \"aut\"),\nperson(given = \"Michael\", family = \"Witting\",\ncomment = c(ORCID = \"0000-0002-1462-4426\"),\nemail = \"michael.witting@helmholtz-muenchen.de\",\nrole = \"ctb\"),\nperson(given = \"Adriano\", family = \"Rutz\",\ncomment = c(ORCID = \"0000-0003-0443-9902\"),\nemail = \"rutz@imsb.biol.ethz.ch\",\nrole = \"ctb\"),\nperson(given = \"Corey\", family = \"Broeckling\",\ncomment = c(ORCID = \"0000-0002-6158-827X\"),\nemail = \"Corey.Broeckling@ColoState.edu\", role = \"ctb\"))", "Description": "Mass spectrometry (MS) data backend supporting import and\nexport of MS/MS spectra data from Mascot Generic Format (mgf)\nfiles. Objects defined in this package are supposed to be used\nwith the Spectra Bioconductor package. This package thus adds\nmgf file support to the Spectra package.", "License": "Artistic-2.0", "Encoding": "UTF-8", "VignetteBuilder": "knitr", "BugReports": "https://github.com/RforMassSpectrometry/MsBackendMgf/issues", "URL": "https://github.com/RforMassSpectrometry/MsBackendMgf", "biocViews": "Infrastructure, Proteomics, MassSpectrometry, Metabolomics,\nDataImport", "Roxygen": "list(markdown=TRUE)", "RoxygenNote": "7.3.3", "Collate": "'hidden_aliases.R' 'MsBackendMgf.R' 'functions-mgf.R'", "Config/pak/sysreqs": "cmake make libuv1-dev", "Repository": "https://rformassspectrometry.r-universe.dev", "Date/Publication": "2026-03-03 07:15:57 UTC", "RemoteUrl": "https://github.com/rformassspectrometry/msbackendmgf", "RemoteRef": "HEAD", "RemoteSha": "213d796c63386a5c39e8f547614ea2649a5323b5", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-08 15:26:56 UTC", "User": "root" }, "Author": "RforMassSpectrometry Package Maintainer [cre],\nLaurent Gatto [aut] (ORCID: ),\nJohannes Rainer [aut] (ORCID: ),\nSebastian Gibb [aut] (ORCID: ),\nMichael Witting [ctb] (ORCID: ),\nAdriano Rutz [ctb] (ORCID: ),\nCorey Broeckling [ctb] (ORCID: )", "Maintainer": "RforMassSpectrometry Package Maintainer ", "MD5sum": "2e6df887c7685c90fca85c9b2d88c390", "_user": "rformassspectrometry", "_type": "src", "_file": "MsBackendMgf_1.19.1.tar.gz", "_fileid": "163e68bf2f65ede0914607a471ac3ba2011c2216815ab463826e436920116fb2", "_filesize": 153736, "_sha256": "163e68bf2f65ede0914607a471ac3ba2011c2216815ab463826e436920116fb2", "_created": "2026-06-08T15:26:56.000Z", "_published": "2026-06-08T15:30:43.051Z", "_distro": "noble", "_jobs": [ { "job": 80132055358, "time": 189, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "OK", "artifact": "7484899834" }, { "job": 80132055369, "time": 187, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7484898627" }, { "job": 80132055379, "time": 179, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7484875910" }, { "job": 80132055611, "time": 155, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7484875118" }, { "job": 80131259093, "time": 218, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7484818007" }, { "job": 80132055686, "time": 115, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7484867637" }, { "job": 80132055456, "time": 164, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7484878826" }, { "job": 80132055539, "time": 156, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7484876013" }, { "job": 80132055332, "time": 166, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7484879399" } ], "_buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148034668", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/rformassspectrometry/msbackendmgf", "_commit": { "id": "213d796c63386a5c39e8f547614ea2649a5323b5", "author": "Johannes Rainer <5506112+jorainer@users.noreply.github.com>", "committer": "GitHub ", "message": "Merge pull request #36 from rformassspectrometry/jomain\n\nrefactor: use data.table::rbindlist to merge data.frame", "time": 1772522157 }, "_maintainer": { "name": "RforMassSpectrometry Package Maintainer", "email": "maintainer@rformassspectrometry.org" }, "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 4.0", "role": "Depends" }, { "package": "Spectra", "version": ">= 1.5.14", "role": "Depends" }, { "package": "ProtGenerics", "version": ">= 1.35.3", "role": "Imports" }, { "package": "BiocParallel", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "IRanges", "role": "Imports" }, { "package": "MsCoreUtils", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "stats", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "version": ">= 1.1.0", "role": "Suggests" }, { "package": "roxygen2", "role": "Suggests" }, { "package": "BiocStyle", "version": ">= 2.5.19", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" } ], "_owner": "rformassspectrometry", "_selfowned": true, "_usedby": 2, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-10", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.21.0", "bioc": "3.24" }, { "branch": "release", "version": "1.20.0", "bioc": "3.23" } ], "_topics": [ "infrastructure", "proteomics", "massspectrometry", "metabolomics", "dataimport" ], "_stars": 5, "_contributors": [ { "user": "jorainer", "count": 97, "uuid": 5506112 }, { "user": "lgatto", "count": 16, "uuid": 384198 }, { "user": "jwokaty", "count": 14, "uuid": 1744257 }, { "user": "nturaga", "count": 6, "uuid": 2746443 }, { "user": "michaelwitting", "count": 3, "uuid": 2734706 }, { "user": "sgibb", "count": 2, "uuid": 1828443 } ], "_userbio": { "uuid": 51361942, "type": "organization", "name": "RforMassSpectrometry", "description": "R packages for mass spectrometry" }, "_downloads": { "count": 0, "source": "https://cranlogs.r-pkg.org/downloads/total/last-month/MsBackendMgf" }, "_devurl": "https://github.com/rformassspectrometry/msbackendmgf", "_searchresults": 84, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/MsBackendMgf.html", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/rformassspectrometry/msbackendmgf", "_realowner": "bioc", "_cranurl": true, "_exports": [ "backendInitialize", "export", "MsBackendAnnotatedMgf", "MsBackendMgf", "readMgf", "readMgfSplit", "spectraVariableMapping" ], "_help": [ { "page": "MsBackendMgf", "title": "MS data backend for MGF files", "topics": [ "backendInitialize,MsBackendAnnotatedMgf-method", "backendInitialize,MsBackendMgf-method", "export,MsBackendMgf-method", "MsBackendAnnotatedMgf", "MsBackendMgf", "MsBackendMgf-class", "spectraVariableMapping,MsBackendMgf-method" ] }, { "page": "readMgf", "title": "Reading MGF files", "topics": [ "readMgf", "readMgfSplit" ] } ], "_pkglogo": "https://github.com/rformassspectrometry/msbackendmgf/raw/HEAD/logo.png", "_readme": "https://github.com/rformassspectrometry/msbackendmgf/raw/HEAD/README.md", "_rundeps": [ "BH", "BiocGenerics", "BiocParallel", "clue", "cluster", "codetools", "cpp11", "data.table", "formatR", "fs", "futile.logger", "futile.options", "generics", "IRanges", "lambda.r", "MASS", "MetaboCoreUtils", "MsCoreUtils", "ProtGenerics", "Rcpp", "S4Vectors", "snow", "Spectra" ], "_vignettes": [ { "source": "MsBackendMgf.Rmd", "filename": "MsBackendMgf.html", "title": "Description and usage of MsBackendMgf", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installation", "Importing MS/MS data from MGF files", "Annotated MGF files", "Parallel processing", "Session information" ], "created": "2020-04-16 19:16:16", "modified": "2025-04-07 06:50:35", "commits": 12 } ], "_score": 7.100370545117563, "_indexed": false, "_nocasepkg": "msbackendmgf", "_universes": [ "rformassspectrometry" ], "_indexurl": "https://bioc.r-universe.dev/MsBackendMgf", "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.19.1", "date": "2026-06-08T15:29:35.000Z", "distro": "noble", "commit": "213d796c63386a5c39e8f547614ea2649a5323b5", "fileid": "3cbf0ac118625b9f459f73efbe4477276ce011471c453c1fcc8ea87726db3016", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148034668" }, { "r": "4.6.0", "os": "linux", "version": "1.19.1", "date": "2026-06-08T15:29:28.000Z", "distro": "noble", "commit": "213d796c63386a5c39e8f547614ea2649a5323b5", "fileid": "902e3befb9f758db356a50ccf6789985e02ee1ce1324c5747c03f887f17dee63", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148034668" }, { "r": "4.5.3", "os": "mac", "version": "1.19.1", "date": "2026-06-08T15:28:55.000Z", "commit": "213d796c63386a5c39e8f547614ea2649a5323b5", "fileid": "f4c360e09ee962d4d7d07946c85d21252478f0ebf8a1e96f93ca0d249463c187", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148034668" }, { "r": "4.6.0", "os": "mac", "version": "1.19.1", "date": "2026-06-08T15:28:46.000Z", "commit": "213d796c63386a5c39e8f547614ea2649a5323b5", "fileid": "8b94a14bcaf62d5b42132602933d39ae246764c6713ee9e1dde4871e96f18147", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148034668" }, { "r": "4.6.0", "os": "wasm", "version": "1.19.1", "date": "2026-06-08T15:29:13.000Z", "commit": "213d796c63386a5c39e8f547614ea2649a5323b5", "fileid": "253c4ee2502374aad8193755e9cf58104e0dbbb770796f2741153bdd038af4de", "status": "success", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148034668" }, { "r": "4.7.0", "os": "win", "version": "1.19.1", "date": "2026-06-08T15:28:34.000Z", "commit": "213d796c63386a5c39e8f547614ea2649a5323b5", "fileid": "fa14d35221d2733ed498c7681a630753039058cfd7e7b8ff803a2f1cc95730df", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148034668" }, { "r": "4.5.3", "os": "win", "version": "1.19.1", "date": "2026-06-08T15:28:29.000Z", "commit": "213d796c63386a5c39e8f547614ea2649a5323b5", "fileid": "79b1d483827a1a2bcc66d46e42d23b620f39e767024f468c834f244b8d93585b", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148034668" }, { "r": "4.6.0", "os": "win", "version": "1.19.1", "date": "2026-06-08T15:28:31.000Z", "commit": "213d796c63386a5c39e8f547614ea2649a5323b5", "fileid": "308f58e6633758f88ef4912f529e76b17a8656ce731eb3fe4c66e2b1bce95048", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/rformassspectrometry/actions/runs/27148034668" } ] }