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  "Package": "MsBackendMassbank",
  "Title": "Mass Spectrometry Data Backend for MassBank record Files",
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  "Description": "Mass spectrometry (MS) data backend supporting import and\nexport of MS/MS library spectra from MassBank record files.\nDifferent backends are available that allow handling of data in\nplain MassBank text file format or allow also to interact\ndirectly with MassBank SQL databases. Objects from this package\nare supposed to be used with the Spectra Bioconductor package.\nThis package thus adds MassBank support to the Spectra package.",
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  "Encoding": "UTF-8",
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