Package: SpectriPy 0.2.0

Johannes Rainer

SpectriPy: Integrating Spectra with Python's matchms

The SpectriPy package allows integration of Python-based MS analysis code with the Spectra package. Spectra objects can be converted into Python's matchms Spectrum objects. In addition, SpectriPy integrates and wraps the similarity scoring functions from the matchms package into R.

Authors:Michael Witting [aut], Johannes Rainer [aut, cre], Carolin Huber [aut], Helge Hecht [aut]

SpectriPy_0.2.0.tar.gz
SpectriPy_0.2.0.zip(r-4.5)SpectriPy_0.2.0.zip(r-4.4)SpectriPy_0.1.1.zip(r-4.3)
SpectriPy_0.2.0.tgz(r-4.4-any)SpectriPy_0.2.0.tgz(r-4.3-any)
SpectriPy_0.2.0.tar.gz(r-4.5-noble)SpectriPy_0.2.0.tar.gz(r-4.4-noble)
SpectriPy_0.2.0.tgz(r-4.4-emscripten)SpectriPy_0.2.0.tgz(r-4.3-emscripten)
SpectriPy.pdf |SpectriPy.html✨
SpectriPy/json (API)
NEWS

# Install 'SpectriPy' in R:
install.packages('SpectriPy', repos = c('https://rformassspectrometry.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/rformassspectrometry/spectripy/issues

On CRAN:

infrastructuremetabolomicsmassspectrometrymass-spectrometrypython

4.30 score 8 stars 4 scripts 8 exports 37 dependencies

Last updated 7 days agofrom:c4c35cbf92. Checks:OK: 1 WARNING: 1 ERROR: 2 NOTE: 3. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 14 2024
R-4.5-winNOTENov 14 2024
R-4.5-linuxWARNINGNov 14 2024
R-4.4-winNOTENov 14 2024
R-4.4-macNOTENov 14 2024
R-4.3-winERROROct 30 2024
R-4.3-macERRORNov 14 2024

Exports:compareSpectriPyCosineGreedyParamCosineHungarianParamModifiedCosineParamNeutralLossesCosineParampyspec_to_rspecrspec_to_pyspecspectraVariableMapping

Dependencies:basiliskbasilisk.utilsBHBiocGenericsBiocParallelclueclustercodetoolscpp11dir.expiryfilelockformatRfsfutile.loggerfutile.optionsgenericshereIRangesjsonlitelambda.rlatticeMASSMatrixMetaboCoreUtilsMsCoreUtilspngProtGenericsrappdirsRcppRcppTOMLreticulaterlangrprojrootS4VectorssnowSpectrawithr

Integrating Spectra with Python's matchms package

Rendered fromSpectriPy.Rmdusingknitr::rmarkdownon Nov 14 2024.

Last update: 2024-11-14
Started: 2022-03-03

Readme and manuals

Help Manual

Help pageTopics
Spectra similarity calculations using matchmscompareSpectriPy compareSpectriPy,Spectra,missing,CosineGreedyParam-method compareSpectriPy,Spectra,Spectra,CosineGreedyParam-method CosineGreedyParam CosineHungarianParam ModifiedCosineParam NeutralLossesCosineParam
Low level functions to convert between Spectra and matchms Spectrumpyspec_to_rspec rspec_to_pyspec spectraVariableMapping,missing-method