Package: SpectriPy 0.1.1

Johannes Rainer

SpectriPy: Integrating Spectra with Python's matchms

The SpectriPy package allows integration of Python-based MS analysis code with the Spectra package. Spectra objects can be converted into Python's matchms Spectrum objects. In addition, SpectriPy integrates and wraps the similarity scoring functions from the matchms package into R.

Authors:Michael Witting [aut], Johannes Rainer [aut, cre], Carolin Huber [aut], Helge Hecht [aut]

SpectriPy_0.1.1.tar.gz
SpectriPy_0.1.1.zip(r-4.5)SpectriPy_0.1.1.zip(r-4.4)SpectriPy_0.1.1.zip(r-4.3)
SpectriPy_0.1.1.tgz(r-4.4-any)SpectriPy_0.1.1.tgz(r-4.3-any)
SpectriPy_0.1.1.tar.gz(r-4.5-noble)SpectriPy_0.1.1.tar.gz(r-4.4-noble)
SpectriPy_0.1.1.tgz(r-4.4-emscripten)SpectriPy_0.1.1.tgz(r-4.3-emscripten)
SpectriPy.pdf |SpectriPy.html
SpectriPy/json (API)
NEWS

# Install 'SpectriPy' in R:
install.packages('SpectriPy', repos = c('https://rformassspectrometry.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/rformassspectrometry/spectripy/issues

On CRAN:

infrastructuremass-spectrometrypython

7 exports 9 stars 1.38 score 36 dependencies 2 scripts

Last updated 1 years agofrom:08c696d222. Checks:OK: 1 ERROR: 6. Indexed: yes.

TargetResultDate
Doc / VignettesOKAug 31 2024
R-4.5-winERRORAug 31 2024
R-4.5-linuxERRORAug 31 2024
R-4.4-winERRORAug 31 2024
R-4.4-macERRORAug 31 2024
R-4.3-winERRORAug 31 2024
R-4.3-macERRORAug 31 2024

Exports:compareSpectriPyCosineGreedyParamCosineHungarianParamModifiedCosineParampyspec_to_rspecrspec_to_pyspecspectraVariableMapping

Dependencies:basiliskbasilisk.utilsBHBiocGenericsBiocParallelclueclustercodetoolscpp11dir.expiryfilelockformatRfsfutile.loggerfutile.optionshereIRangesjsonlitelambda.rlatticeMASSMatrixMetaboCoreUtilsMsCoreUtilspngProtGenericsrappdirsRcppRcppTOMLreticulaterlangrprojrootS4VectorssnowSpectrawithr

Integrating Spectra with Python's matchms package

Rendered fromSpectriPy.Rmdusingknitr::rmarkdownon Aug 31 2024.

Last update: 2022-03-23
Started: 2022-03-03

Readme and manuals

Help Manual

Help pageTopics
Spectra similarity calculations using matchmscompareSpectriPy compareSpectriPy,Spectra,missing,CosineGreedyParam-method compareSpectriPy,Spectra,Spectra,CosineGreedyParam-method CosineGreedyParam CosineHungarianParam ModifiedCosineParam
Low level functions to convert between Spectra and matchms Spectrumpyspec_to_rspec rspec_to_pyspec spectraVariableMapping,missing-method