Package: MsStash
Title: Infrastructure to serialize and restore mass spectrometry data
        objects
Version: 0.99.0
Authors@R: 
    c(person(given = "Johannes", family = "Rainer",
             email = "Johannes.Rainer@eurac.edu",
             role = c("aut", "cre"),
             comment = c(ORCID = "0000-0002-6977-7147")),
      person(given = "Philippine", family = "Louail",
             email = "philippine.louail@eurac.edu",
	     role = "aut",
	     comment = c(ORCID = "0009-0007-5429-6846")),
      person(given = "Laurent", family = "Gatto",
             email = "laurent.gatto@uclouvain.be",
	     role = "ctb",
	     comment = c(ORCID = "0000-0002-1520-2268")))
Description: The serialization mechanism of R allows to save and load R
        data objects in a binary format, that can however not be read
        by other programming languages or software. The MsStash package
        defines classes and method to enable serializing and restoring,
        or importing, mass spectrometry data objects to and from
        language agnostic file formats. A variety of different file
        types, including HDF5 and JSON-based formats defined by the
        Bioconductor *alabaster* package are supported. The file type
        can be defined and configured through a second argument `param`
        of the save/read methods. Additional packages extending MsStash
        provide the implementations to serialize/restore MS data
        objects.
Depends: R (>= 4.6.0)
Imports: methods, ProtGenerics
Suggests: BiocStyle, rmarkdown, knitr, alabaster.base, fs, testthat
License: GPL-3
Encoding: UTF-8
VignetteBuilder: knitr
BugReports: https://github.com/RforMassSpectrometry/MsStash/issues
URL: https://github.com/RforMassSpectrometry/MsStash
biocViews: Infrastructure, MassSpectrometry, Metabolomics, DataImport,
        Proteomics
Roxygen: list(markdown=TRUE)
Collate: 'PlainTextParam.R' 'AlabasterParam.R' 'AllGenerics.R'
Config/roxygen2/version: 8.0.0
Repository: https://rformassspectrometry.r-universe.dev
Date/Publication: 2026-06-23 08:41:19 UTC
RemoteUrl: https://github.com/rformassspectrometry/MsStash
RemoteRef: HEAD
RemoteSha: c5cff3786f0b3ae0d6c33a87c0081c90e651ced6
NeedsCompilation: no
Packaged: 2026-07-03 09:35:06 UTC; root
Author: Johannes Rainer [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6977-7147>),
  Philippine Louail [aut] (ORCID:
    <https://orcid.org/0009-0007-5429-6846>),
  Laurent Gatto [ctb] (ORCID: <https://orcid.org/0000-0002-1520-2268>)
Maintainer: Johannes Rainer <Johannes.Rainer@eurac.edu>