Package: MsFeatures
Title: Functionality for Mass Spectrometry Features
Version: 1.19.0
Description: The MsFeature package defines functionality for Mass
        Spectrometry features. This includes functions to group (LC-MS)
        features based on some of their properties, such as retention
        time (coeluting features), or correlation of signals across
        samples. This packge hence allows to group features, and its
        results can be used as an input for the `QFeatures` package
        which allows to aggregate abundance levels of features within
        each group. This package defines concepts and functions for
        base and common data types, implementations for more specific
        data types are expected to be implemented in the respective
        packages (such as e.g. `xcms`). All functionality of this
        package is implemented in a modular way which allows
        combination of different grouping approaches and enables its
        re-use in other R packages.
Authors@R: c(person(given = "Johannes", family = "Rainer",
                    email = "Johannes.Rainer@eurac.edu",
                    comment = c(ORCID = "0000-0002-6977-7147"),
                    role = c("aut", "cre")),
             person(given = "Johan", family = "Lassen",
                    email = "johan.lassen@forens.au.dk",
                    role = c("ctb"),
                    comment = c(ORCID = "0000-0002-0452-566X")))
Depends: R (>= 4.0)
Imports: methods, ProtGenerics (>= 1.23.5), MsCoreUtils,
        SummarizedExperiment, stats
Suggests: testthat, roxygen2, BiocStyle, pheatmap, knitr, rmarkdown
License: Artistic-2.0
Encoding: UTF-8
LazyData: no
BugReports: https://github.com/RforMassSpectrometry/MsFeatures/issues
URL: https://github.com/RforMassSpectrometry/MsFeatures
biocViews: Infrastructure, MassSpectrometry, Metabolomics
RoxygenNote: 7.3.2
Roxygen: list(markdown=TRUE)
VignetteBuilder: knitr
Collate: 'corRows.R' 'grouping-functions.R' 'hidden_aliases.R'
        'AllGenerics.R' 'AbundanceSimilarityParam.R'
        'SimilarRtimeParam.R' 'featureGroups.R' 'se.R'
Config/pak/sysreqs: zlib1g-dev
Repository: https://rformassspectrometry.r-universe.dev
Date/Publication: 2025-10-29 15:06:00 UTC
RemoteUrl: https://github.com/rformassspectrometry/msfeatures
RemoteRef: HEAD
RemoteSha: e8548f333b1b09978f0c28548c3520645fa8b655
NeedsCompilation: no
Packaged: 2026-07-24 09:32:44 UTC; root
Author: Johannes Rainer [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6977-7147>),
  Johan Lassen [ctb] (ORCID: <https://orcid.org/0000-0002-0452-566X>)
Maintainer: Johannes Rainer <Johannes.Rainer@eurac.edu>