Introduction | Installation | A stash for MsExperiment objects | Creating self-contained stashes | Retrieve MS experiments from MetaboLights | Session information
Package: MsExperimentStash 0.97.3
Johannes Rainer
MsExperimentStash: Serialize and restore MsExperiment objects in interoperable file formats
The serialization mechanism of R allows to save and load R data objects in a binary format, that can however not be read by other programming languages or software. The MsExperimentStash package implements the serialization methods from the MsStash package for MsExperiment objects. Data can be stashed in a variety of file formats and types, including HDF5 and JSON-based formats defined by the Bioconductor *alabaster* package.
Authors:
MsExperimentStash_0.97.3.tar.gz
MsExperimentStash_0.97.3.zip(r-4.7-any)MsExperimentStash_0.97.3.zip(r-4.6-any)
MsExperimentStash_0.97.3.tgz(r-4.6-any)
MsExperimentStash_0.97.3.tar.gz(r-4.7-any)MsExperimentStash_0.97.3.tar.gz(r-4.6-any)
MsExperimentStash_0.97.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MsExperimentStash/json (API)
| # Install 'MsExperimentStash' in R: |
| install.packages('MsExperimentStash', repos = c('https://rformassspectrometry.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/rformassspectrometry/msexperimentstash/issues
infrastructuremassspectrometrymetabolomicsdataimportproteomics
Last updated from:6f4d70e5b3. Checks:7 OK, 2 FAIL. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel-x86_64 | OK | 628 | ||
| source / vignettes | OK | 545 | ||
| linux-release-x86_64 | OK | 685 | ||
| macos-release-arm64 | OK | 667 | ||
| macos-oldrel-arm64 | FAIL | 115 | ||
| windows-devel-x86_64 | OK | 772 | ||
| windows-release-x86_64 | OK | 792 | ||
| windows-oldrel-x86_64 | FAIL | 98 | ||
| wasm-release | OK | 173 |
Exports:MetaboLightsParamsaveObject
Dependencies:abindalabaster.basealabaster.schemasAnnotationFilteraskpassassortheadbase64encBHBiobaseBiocBaseUtilsBiocGenericsbiocmakeBiocParallelbslibcachemcliclueclustercodetoolscpp11crosstalkcurldata.tableDBIDelayedArraydigestdir.expirydplyrevaluatefarverfastmapfilelockfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomicRangesggplot2gluegtablehighrhtmltoolshtmlwidgetshttrigraphIRangesisobandjquerylibjsonlitejsonvalidateknitrlabelinglambda.rlaterlatticelazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoiseMetaboCoreUtilsmimeMsCoreUtilsMsExperimentMsStashMultiAssayExperimentopensslotelpillarpkgconfigplotlyplyrpromisesProtGenericspurrrQFeaturesR6rappdirsRColorBrewerRcppreshape2rhdf5rhdf5filtersRhdf5librlangrmarkdownS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraySpectrastringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8V8vctrsviridisLitewithrxfunXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Load Content from a MetaboLights Study | MetaboLightsParam readMsObject,MsExperiment,MetaboLightsParam-method |
| Stash for 'MsExperimentFiles' | MsExperimentFilesStash readMsObject,MsExperimentFiles,AlabasterParam-method readMsObject,MsExperimentFiles,PlainTextParam-method saveMsObject,MsExperimentFiles,AlabasterParam-method saveMsObject,MsExperimentFiles,PlainTextParam-method saveObject,MsExperimentFiles-method |
| 'MsExperiment' Stash | MsExperimentStash readMsObject,MsExperiment,AlabasterParam-method readMsObject,MsExperiment,PlainTextParam-method saveMsObject,MsExperiment,AlabasterParam-method saveMsObject,MsExperiment,PlainTextParam-method saveObject,MsExperiment-method |
