Package: MsExperimentStash 0.97.1

Johannes Rainer

MsExperimentStash: Serialize and restore MsExperiment objects in interoperable file formats

The serialization mechanism of R allows to save and load R data objects in a binary format, that can however not be read by other programming languages or software. The MsExperimentStash package implements the serialization methods from the MsStash package for MsExperiment objects. Data can be stashed in a variety of file formats and types, including HDF5 and JSON-based formats defined by the Bioconductor *alabaster* package.

Authors:Johannes Rainer [aut, cre], Philippine Louail [aut], Laurent Gatto [ctb], Gabriele Tomè [ctb]

MsExperimentStash_0.97.1.tar.gz
MsExperimentStash_0.97.1.zip(r-4.7)MsExperimentStash_0.97.1.zip(r-4.6)
MsExperimentStash_0.97.1.tgz(r-4.6-any)
MsExperimentStash_0.97.1.tar.gz(r-4.7-any)MsExperimentStash_0.97.1.tar.gz(r-4.6-any)
MsExperimentStash_0.97.1.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
MsExperimentStash/json (API)

# Install 'MsExperimentStash' in R:
install.packages('MsExperimentStash', repos = c('https://rformassspectrometry.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rformassspectrometry/msexperimentstash/issues

On CRAN:

Conda:

infrastructuremassspectrometrymetabolomicsdataimportproteomics

2.00 score 1 exports 116 dependencies

Last updated from:47f213a932. Checks:7 OK, 2 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64OK346
source / vignettesOK271
linux-release-x86_64OK321
macos-release-arm64OK197
macos-oldrel-arm64FAIL102
windows-develOK294
windows-releaseOK246
windows-oldrelFAIL105
wasm-releaseOK221

Exports:saveObject

Dependencies:abindalabaster.basealabaster.schemasAnnotationFilteraskpassassortheadbase64encBHBiobaseBiocBaseUtilsBiocGenericsbiocmakeBiocParallelbslibcachemcliclueclustercodetoolscpp11crosstalkcurldata.tableDBIDelayedArraydigestdir.expirydplyrevaluatefarverfastmapfilelockfontawesomeformatRfsfutile.loggerfutile.optionsgenericsGenomicRangesggplot2gluegtablehighrhtmltoolshtmlwidgetshttrigraphIRangesisobandjquerylibjsonlitejsonvalidateknitrlabelinglambda.rlaterlatticelazyevallifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmemoiseMetaboCoreUtilsmimeMsCoreUtilsMsExperimentMsStashMultiAssayExperimentopensslotelpillarpkgconfigplotlyplyrpromisesProtGenericspurrrQFeaturesR6rappdirsRColorBrewerRcppreshape2rhdf5rhdf5filtersRhdf5librlangrmarkdownS4ArraysS4VectorsS7sassscalesSeqinfosnowSparseArraySpectrastringistringrSummarizedExperimentsystibbletidyrtidyselecttinytexutf8V8vctrsviridisLitewithrxfunXVectoryaml

Readme and manuals

Help Manual

Help pageTopics
Stash for 'MsExperimentFiles'MsExperimentFilesStash readMsObject,MsExperimentFiles,AlabasterParam-method readMsObject,MsExperimentFiles,PlainTextParam-method saveMsObject,MsExperimentFiles,AlabasterParam-method saveMsObject,MsExperimentFiles,PlainTextParam-method saveObject,MsExperimentFiles-method