NEWS

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MsExperiment 1.13

Changes in 1.13.1

• Load test data from MsDataHub and remove dependency on the msdata package

MsExperiment 1.11

Changed in 1.11.1

• Fix readMsExperiment(): if sampleData has row names, they have to match the names of the data files.

MsExperiment 1.9

MsExperiment 1.9.1

• Small fixes and update to MsBackendSql version >= 1.7.3.

MsExperiment 1.5

MsExperiment 1.5.5

• Add spectraSampleIndex() function.

MsExperiment 1.5.4

• Fix missing export of filterSpectra.

MsExperiment 1.5.3

• Add filterSpectra method to allow filtering of Spectra within an MsExperiment while keeping possibly present relationships between samples and spectra consistent.

MsExperiment 1.5.2

• Add support to read/write sample data from/to a MsBackendSql database (issue #39).

MsExperiment 1.5.1

• Fix subset with negative indices (issue #37.)

MsExperiment 1.1

MsExperiment 1.1.4

• Fix and improve show,MSnExperiment.
• New otherData setter and getter functions.

MsExperiment 1.1.3

• Fix problem in unit test.

MsExperiment 1.1.2

• Add readMsExperiment function (issue #32).

MsExperiment 1.1.1

• Use S4Vectors::findMatches in linkSampleData which improves performance, especially for larger data sets.

MsExperiment 1.1.0

• Bioconductor release 3.17 (devel).

MsExperiment 0.99

MsExperiment 0.99.4

• Import spectra<- from ProtGenerics.

MsExperiment 0.99.3

• Fix assignment of default value for @experimentFiles slot.

MsExperiment 0.99.2

• Fix imports.
• Inherit from the S4Vectors::Annotated class.
• Rename the @assay slot into @qdata.
• Fix class unions.

MsExperiment 0.99.0

• Prepare for Bioconductor submission.