Package: MsBackendSql
Title: SQL-based Mass Spectrometry Data Backend
Version: 1.11.3
Authors@R: 
    c(person(given = "Johannes", family = "Rainer",
             email = "Johannes.Rainer@eurac.edu",
             role = c("aut", "cre"),
             comment = c(ORCID = "0000-0002-6977-7147")),
      person(given = "Chong", family = "Tang",
             email = "chong.tang@uclouvain.be",
	     role = "ctb"),
      person(given = "Laurent", family = "Gatto",
             email = "laurent.gatto@uclouvain.be",
	     role = "ctb",
	     comment = c(ORCID = "0000-0002-1520-2268")))
Description: SQL-based mass spectrometry (MS) data backend supporting
        also storange and handling of very large data sets. Objects
        from this package are supposed to be used with the Spectra
        Bioconductor package. Through the MsBackendSql with its minimal
        memory footprint, this package thus provides an alternative MS
        data representation for very large or remote MS data sets.
Depends: R (>= 4.2.0), Spectra (>= 1.19.8)
Imports: BiocParallel, S4Vectors, methods, ProtGenerics (>= 1.35.3),
        DBI, MsCoreUtils, IRanges, data.table, progress, stringi,
        fastmatch, BiocGenerics
Suggests: testthat, knitr (>= 1.1.0), roxygen2, BiocStyle (>= 2.5.19),
        RSQLite, MsDataHub, rmarkdown, microbenchmark, mzR
License: Artistic-2.0
Encoding: UTF-8
VignetteBuilder: knitr
BugReports: https://github.com/RforMassSpectrometry/MsBackendSql/issues
URL: https://github.com/RforMassSpectrometry/MsBackendSql
biocViews: Infrastructure, MassSpectrometry, Metabolomics, DataImport,
        Proteomics
Roxygen: list(markdown=TRUE)
RoxygenNote: 7.3.3
Collate: 'MsBackendSql-functions.R' 'MsBackendSql.R'
        'MsBackendOfflineSql.R'
Config/pak/sysreqs: cmake make libicu-dev libuv1-dev
Repository: https://rformassspectrometry.r-universe.dev
Date/Publication: 2026-02-05 09:55:08 UTC
RemoteUrl: https://github.com/rformassspectrometry/msbackendsql
RemoteRef: HEAD
RemoteSha: 9b5f2feb56547eb85ef4022d252107fd5a1f4175
NeedsCompilation: no
Packaged: 2026-07-23 11:09:08 UTC; root
Author: Johannes Rainer [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-6977-7147>),
  Chong Tang [ctb],
  Laurent Gatto [ctb] (ORCID: <https://orcid.org/0000-0002-1520-2268>)
Maintainer: Johannes Rainer <Johannes.Rainer@eurac.edu>