Package: MsBackendMetaboLights 0.99.0

Johannes Rainer

MsBackendMetaboLights: Retrieve Mass Spectrometry Data from MetaboLights

MetaboLights is one of the main public repositories for storage of metabolomics experiments, which includes analysis results as well as raw data. The MsBackendMetaboLights package provides functionality to retrieve and represent mass spectrometry (MS) data from MetaboLights. Data files are downloaded and cached locally avoiding repetitive downloads. MS data from metabolomics experiments can thus be directly and seamlessly integrated into R-based analysis workflows with the Spectra and MsBackendMetaboLights package.

Authors:Johannes Rainer [aut, cre], Philippine Louail [aut]

MsBackendMetaboLights_0.99.0.tar.gz
MsBackendMetaboLights_0.99.0.zip(r-4.5)MsBackendMetaboLights_0.99.0.zip(r-4.4)MsBackendMetaboLights_0.99.0.zip(r-4.3)
MsBackendMetaboLights_0.99.0.tgz(r-4.4-any)MsBackendMetaboLights_0.99.0.tgz(r-4.3-any)
MsBackendMetaboLights_0.99.0.tar.gz(r-4.5-noble)MsBackendMetaboLights_0.99.0.tar.gz(r-4.4-noble)
MsBackendMetaboLights_0.99.0.tgz(r-4.4-emscripten)MsBackendMetaboLights_0.99.0.tgz(r-4.3-emscripten)
MsBackendMetaboLights.pdf |MsBackendMetaboLights.html✨
MsBackendMetaboLights/json (API)

# Install 'MsBackendMetaboLights' in R:
install.packages('MsBackendMetaboLights', repos = c('https://rformassspectrometry.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/rformassspectrometry/msbackendmetabolights/issues

On CRAN:

infrastructuremassspectrometrymetabolomicsdataimportproteomicsmass-spectrometrymetabolomics-data

5 exports 1 stars 0.49 score 60 dependencies 4 scripts

Last updated 6 days agofrom:c5755ba61e. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 11 2024
R-4.5-winNOTESep 11 2024
R-4.5-linuxNOTESep 11 2024
R-4.4-winOKSep 11 2024
R-4.4-macOKSep 11 2024
R-4.3-winOKSep 11 2024
R-4.3-macOKSep 11 2024

Exports:backendInitializebackendMergeMsBackendMetaboLightsmtbls_ftp_pathmtbls_list_files

Dependencies:askpassBHBiocFileCacheBiocGenericsBiocParallelbitbit64blobcachemcliclueclustercodetoolscpp11curlDBIdbplyrdplyrfansifastmapfilelockformatRfsfutile.loggerfutile.optionsgenericsgluehttrIRangesjsonlitelambda.rlifecyclemagrittrMASSmemoiseMetaboCoreUtilsmimeMsCoreUtilsopensslpillarpkgconfigplogrProtGenericspurrrR6RcpprlangRSQLiteS4VectorssnowSpectrastringistringrsystibbletidyrtidyselectutf8vctrswithr

Retrieve and Use Mass Spectrometry Data from MetaboLights

Rendered fromMsBackendMetaboLights.Rmdusingknitr::rmarkdownon Sep 11 2024.

Last update: 2024-09-11
Started: 2024-09-07

Readme and manuals

Help Manual

Help pageTopics
Utility functions for the MetaboLights repositoryMetaboLights-utils mtbls_ftp_path mtbls_list_files
MsBackend representing MS data from MetaboLightsbackendInitialize,MsBackendMetaboLights-method backendMerge,MsBackendMetaboLights-method MsBackendMetaboLights MsBackendMetaboLights-class