Package: Metabonaut
Title: Exploring and Analyzing LC-MS Data
Version: 1.5.0
Authors@R: 
    c(person(given = "Philippine", family = "Louail",
            email = "philippine.louail@outlook.com",
            role = c("aut", "cre"),
            comment = c(ORCID = "0009-0007-5429-6846",
            fnd = "European Union HORIZON-MSCA-2021 project
		    Grant No. 101073062: HUMAN – Harmonising and Unifying Blood
		    Metabolic Analysis Networks")),
     person(given = "Anna", family = "Tagliaferri",
            email = "Anna.Tagliaferri@student.unibz.it",
            role = "ctb",
            comment = c(ORCID = "0009-0001-4044-4285")),
     person(given = "Vinicius", family = "Verri Hernandes",
            email = "vinicius.verri.hernandes@univie.ac.at",
            role = "ctb",
            comment = c(ORCID = "0000-0002-3057-6460")),
     person(given = "Daniel", family = "Marques de Sá e Silva",
            role = "ctb",
            comment = c(ORCID = "0000-0002-9674-042X",
            fnd = "European Union HORIZON-MSCA-2021 project
		    Grant No. 101073062: HUMAN – Harmonising and Unifying Blood
		    Metabolic Analysis Networks")),
     person(given = "Marilyn", family = "De Graeve",
            email = "marilyn.degraeve@eurac.edu",
            role = c("aut"),
            comment = c(ORCID = "0000-0001-6916-401X")),
     person(given = "Vilhelm", family = "Suksi",
            email = "vksuks@utu.fi", role = "aut",
            comment = c(ORCID = "0009-0005-1108-518X")),
     person(given = "Kozo", family= "Nishida", role = "ctb",
            comment = c(ORCID = "0000-0001-8501-7319")),
     person(given = "Johannes", family = "Rainer",
            email = "Johannes.Rainer@eurac.edu",
            role = "aut",
            comment = c(ORCID = "0000-0002-6977-7147"))
            )
Description: This resource hosts tutorials and end-to-end workflows
        describing how to analyze LC-MS/MS data, from raw files to
        annotation, using Bioconductor packages.
License: CC BY-SA 4.0
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Depends: R (>= 4.5), BiocParallel (>= 1.8.0)
Suggests: alabaster.se, missForest, MsCoreUtils, xcms (>= 4.3.4),
        Spectra (>= 1.11.10), MsExperiment, MsIO (>= 0.0.8), SpectriPy
        (>= 1.1.0), MsBackendMetaboLights, ggVennDiagram, UpSetR,
        readxl, limma, matrixStats, pander, ggfortify, gridExtra,
        AnnotationHub, CompoundDb, MetaboAnnotation, vioplot,
        MetaboCoreUtils, BiocStyle, rmarkdown, RColorBrewer,
        SummarizedExperiment, pheatmap, knitr, reticulate, quarto,
        MsBackendMgf, notame, notameStats, notameViz, stringr, RSQLite,
        MsBackendMassbank (>= 1.18.1), RuSirius, zen4R
Remotes: RforMassSpectrometry/MsIO, RforMassSpectrometry/RuSirius,
        sirius-ms/sirius-client-openAPI/client-api_r/generated@2c983e6
URL: https://github.com/rformassspectrometry/Metabonaut/,
        https://rformassspectrometry.github.io/Metabonaut/
BugReports: https://github.com/rformassspectrometry/Metabonaut/issues/new
BiocType: Workflow
RoxygenNote: 7.3.3
VignetteBuilder: quarto, knitr
SystemRequirements: pandoc, python (>= 3.10), quarto
Config/pak/sysreqs: python3
Repository: https://rformassspectrometry.r-universe.dev
Date/Publication: 2026-07-03 11:41:29 UTC
RemoteUrl: https://github.com/rformassspectrometry/metabonaut
RemoteRef: HEAD
RemoteSha: 43745a7876aee34c2128923f7ee049d272dff461
NeedsCompilation: no
Packaged: 2026-07-03 12:59:38 UTC; root
Author: Philippine Louail [aut, cre] (ORCID:
    <https://orcid.org/0009-0007-5429-6846>, fnd: European Union
    HORIZON-MSCA-2021 project Grant No. 101073062: HUMAN – Harmonising
    and Unifying Blood Metabolic Analysis Networks),
  Anna Tagliaferri [ctb] (ORCID: <https://orcid.org/0009-0001-4044-4285>),
  Vinicius Verri Hernandes [ctb] (ORCID:
    <https://orcid.org/0000-0002-3057-6460>),
  Daniel Marques de Sá e Silva [ctb] (ORCID:
    <https://orcid.org/0000-0002-9674-042X>, fnd: European Union
    HORIZON-MSCA-2021 project Grant No. 101073062: HUMAN – Harmonising
    and Unifying Blood Metabolic Analysis Networks),
  Marilyn De Graeve [aut] (ORCID:
    <https://orcid.org/0000-0001-6916-401X>),
  Vilhelm Suksi [aut] (ORCID: <https://orcid.org/0009-0005-1108-518X>),
  Kozo Nishida [ctb] (ORCID: <https://orcid.org/0000-0001-8501-7319>),
  Johannes Rainer [aut] (ORCID: <https://orcid.org/0000-0002-6977-7147>)
Maintainer: Philippine Louail <philippine.louail@outlook.com>